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   TM0002;TM0002
Protein Sequence Comparative Analysis   (PSCA)
 
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TM0002    TM0002            JCSG 281883 Crystal Hit 01-AUG-29

Protein Sequence Information


TOPSAN
JCSG Internal annotations

ACCESSIONTM0002
DESCRIPTIONHypothetical protein TM0002 (TM orfan).
ORGANISMThermotoga maritima
COMMENT 
DR UNIPROT; Q9WXL7_THEMA
DR SPTR; Q9WXL7 (flat text); Q9WXL7 (good view)
DR GenBank; AAD35096
DR FFAS; 281883; Fold and function assignment.
DR TVPC; TM0002; Homologs in PDB, JCSG and SG center.
DR OVP; TM0002; Ortholog view popup.
DR TPM; TM0002; Target PDB monitor.
DR FSS; TM0002; Target function coverage.
PROPERTY Residues: 41 aa
Molecule Weight: 4821.25 Dalton
Isoelectric Point: 6.52
Extinction Coefficient: 6990
Gravy Index: -.74
Number of Met residues: 1
Percentage of Met residues: 2.44 %
Number of Cys residues: 1
Percentage of Cys residues: 2.44 %
SEQUENCE  amino acids 41 aa
>TM0002  TM0002 hypothetical protein
MSPEDWKRLICFHTSKEVLKQTLDDAQQNISDSVSIPLRKY

CDS  cDNA 123 bp
   1 atgtcccccg aagactggaa aaggcttata tgtttccata cctctaagga agtattgaaa    60
  61 caaactctcg acgatgcaca gcagaacatc tccgacagtg tttccatacc tctaaggaag   120
 121 tat   123
Target constructs
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Chemical properties of sequence with tag
GENE PREDICTION
LEFT END RIGHT END FRAME PREDICTOR SCORE 
483 608 -3 Glimmer3 score 4.7 poor
Genemark probabilities -   - -
GenemarkHMM class - -

Notes

The start codon is a ATG/Methionine in most of sequences, but the GTG/V, TTG/L, CTG/I can be the start codons in some cases as expressing in E.coli. The start codon warning is labelled by RED color in sequence(sample: 10174951).

Protein sequence information contains the annotation contents from both of JCSG and SWISS-PROT. The SWISS-PROT/TrEMBL annotation is accessed from SWALL(SPTR) on the EBI SRS server. PDB homologes show both identical and highly similar proteins with released date and protein function.


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