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   TM0003;TM0003
Protein Sequence Comparative Analysis   (PSCA)
 
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TM0003    TM0003            JCSG 281884 Protein Purification 02-AUG-21

Protein Sequence Information


TOPSAN
JCSG Internal annotations

ACCESSIONTM0003
DESCRIPTIONHypothetical protein TM0003 (TM orfan).
ORGANISMThermotoga maritima
COMMENT 
DR UNIPROT; Q9WXL8_THEMA
DR SPTR; Q9WXL8 (flat text); Q9WXL8 (good view)
DR GenBank; AAD35097
DR FFAS; 281884; Fold and function assignment.
DR TVPC; TM0003; Homologs in PDB, JCSG and SG center.
DR OVP; TM0003; Ortholog view popup.
DR TPM; TM0003; Target PDB monitor.
DR FSS; TM0003; Target function coverage.
PROPERTY Residues: 40 aa
Molecule Weight: 4453.7 Dalton
Isoelectric Point: 4.58
Extinction Coefficient: 6990
Gravy Index: -.28
Number of Met residues: 1
Percentage of Met residues: 2.50 %
Number of Cys residues: 0
Percentage of Cys residues: 0.00 %
SEQUENCE  amino acids 40 aa
>TM0003  TM0003 hypothetical protein
METVKAYEVEDIPAIGFNNSLEVWKLFPASSSRSTSSSFQ

CDS  cDNA 120 bp
   1 atggaaactg tgaaggcgta tgaggtggag gatattcctg caattggttt caataattcc    60
  61 ttagaggtat ggaaactttt tccagcatct tcttcacgaa gtacgtcttc atcgtttcaa   120
Target constructs
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Chemical properties of sequence with tag
GENE PREDICTION
LEFT END RIGHT END FRAME PREDICTOR SCORE 
Glimmer3 score - -
Genemark probabilities -   - -
GenemarkHMM class - -

Notes

The start codon is a ATG/Methionine in most of sequences, but the GTG/V, TTG/L, CTG/I can be the start codons in some cases as expressing in E.coli. The start codon warning is labelled by RED color in sequence(sample: 10174951).

Protein sequence information contains the annotation contents from both of JCSG and SWISS-PROT. The SWISS-PROT/TrEMBL annotation is accessed from SWALL(SPTR) on the EBI SRS server. PDB homologes show both identical and highly similar proteins with released date and protein function.


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