PSCA Target Info

TM0003;TM0003	Protein Sequence Comparative Analysis (PSCA)

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TM0003 TM0003 JCSG 281884 Protein Purification 02-AUG-21

Protein Sequence Information

TOPSAN

JCSG Internal annotations

ACCESSION	TM0003
DESCRIPTION	Hypothetical protein TM0003 (TM orfan).
ORGANISM	Thermotoga maritima
COMMENT

DR	UNIPROT; Q9WXL8_THEMA
DR	SPTR; Q9WXL8 (flat text); Q9WXL8 (good view)
DR	GenBank; AAD35097
DR	FFAS; 281884; Fold and function assignment.
DR	TVPC; TM0003; Homologs in PDB, JCSG and SG center.
DR	OVP; TM0003; Ortholog view popup.
DR	TPM; TM0003; Target PDB monitor.
DR	FSS; TM0003; Target function coverage.

PROPERTY

Residues: 40 aa
Molecule Weight: 4453.7 Dalton
Isoelectric Point: 4.58
Extinction Coefficient: 6990
Gravy Index: -.28
Number of Met residues: 1
Percentage of Met residues: 2.50 %
Number of Cys residues: 0
Percentage of Cys residues: 0.00 %

SEQUENCE  amino acids 40 aa
>TM0003  TM0003 hypothetical protein
METVKAYEVEDIPAIGFNNSLEVWKLFPASSSRSTSSSFQ

CDS  cDNA 120 bp
   1 atggaaactg tgaaggcgta tgaggtggag gatattcctg caattggttt caataattcc    60
  61 ttagaggtat ggaaactttt tccagcatct tcttcacgaa gtacgtcttc atcgtttcaa   120

Target constructs
Download sequence in PIR or FASTA format
Chemical properties of sequence with tag

GENE PREDICTION

PREDICTOR	SCORE
Glimmer3 score	-	-
Genemark probabilities	- -	-
GenemarkHMM class	-	-

Notes

The start codon is a ATG/Methionine in most of sequences, but the GTG/V, TTG/L, CTG/I can be the start codons in some cases as expressing in E.coli. The start codon warning is labelled by RED color in sequence(sample: 10174951).

Protein sequence information contains the annotation contents from both of JCSG and SWISS-PROT. The SWISS-PROT/TrEMBL annotation is accessed from SWALL(SPTR) on the EBI SRS server. PDB homologes show both identical and highly similar proteins with released date and protein function.

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