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   TM0004;TM0004
Protein Sequence Comparative Analysis   (PSCA)
 
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TM0004    TM0004            JCSG 281885 Protein Purification 04-JUL-19

Protein Sequence Information


TOPSAN
JCSG Internal annotations

ACCESSIONTM0004
DESCRIPTIONHypothetical protein TM0004 (TM orfan).
ORGANISMThermotoga maritima
COMMENT 
DR UNIPROT; Q9WXL9_THEMA
DR SPTR; Q9WXL9 (flat text); Q9WXL9 (good view)
DR GenBank; AAD35098
DR FFAS; 281885; Fold and function assignment.
DR TVPC; TM0004; Homologs in PDB, JCSG and SG center.
DR OVP; TM0004; Ortholog view popup.
DR TPM; TM0004; Target PDB monitor.
DR FSS; TM0004; Target function coverage.
PROPERTY Residues: 31 aa
Molecule Weight: 3827.28 Dalton
Isoelectric Point: 6.52
Extinction Coefficient: 6990
Gravy Index: -.15
Number of Met residues: 1
Percentage of Met residues: 3.23 %
Number of Cys residues: 0
Percentage of Cys residues: 0.00 %
SEQUENCE  amino acids 31 aa
>TM0004  TM0004 hypothetical protein
MKDLYERFNNSLEVWKLVELFGTSIRIHLFQ

CDS  cDNA 93 bp
   1 atgaaagatt tgtatgaacg tttcaataat tccttagagg tatggaaact tgtcgaactc    60
  61 tttggtactt ccatccggat acatctgttt caa    93
Target constructs
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Chemical properties of sequence with tag
GENE PREDICTION
LEFT END RIGHT END FRAME PREDICTOR SCORE 
Glimmer3 score - -
Genemark probabilities -   - -
GenemarkHMM class - -

Notes

The start codon is a ATG/Methionine in most of sequences, but the GTG/V, TTG/L, CTG/I can be the start codons in some cases as expressing in E.coli. The start codon warning is labelled by RED color in sequence(sample: 10174951).

Protein sequence information contains the annotation contents from both of JCSG and SWISS-PROT. The SWISS-PROT/TrEMBL annotation is accessed from SWALL(SPTR) on the EBI SRS server. PDB homologes show both identical and highly similar proteins with released date and protein function.


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