PSCA Target Info

TM0014;TM0014	Protein Sequence Comparative Analysis (PSCA)

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TM0014 TM0014 JCSG 281895 Protein Purification 04-JUL-20

Protein Sequence Information

TOPSAN

JCSG Internal annotations

ACCESSION	TM0014
DESCRIPTION	Hypothetical protein MPCII.
ORGANISM	Thermotoga maritima
COMMENT

DR	UNIPROT; Q7DFA3_THEMA
DR	SPTR; Q56315 (flat text); Q56315 (good view)
DR	GenBank; CAA59461
DR	Interpro; IPR004089; Chmtaxis_transd;
DR	PDB; 3G67; Identical; 28-JUL-09; METHYL-ACCEPTING CHEMOTAXIS PROTEIN;
DR	PDB; 3G6B; Identical; 28-JUL-09; METHYL-ACCEPTING CHEMOTAXIS PROTEIN;
DR	PDB; 3UR1; Identical; 07-MAR-12; CHEMOTAXIS PROTEIN CHEA;
DR	PDB; 1QU7; Highly similar; 12-JUL-00; METHYL-ACCEPTING CHEMOTAXIS PROTEIN I;
DR	FFAS; 281895; Fold and function assignment.
DR	TVPC; TM0014; Homologs in PDB, JCSG and SG center.
DR	OVP; TM0014; Ortholog view popup.
DR	TPM; TM0014; Target PDB monitor.
DR	FSS; TM0014; Target function coverage.

PROPERTY

Residues: 278 aa
Molecule Weight: 31658.48 Dalton
Isoelectric Point: 5.29
Extinction Coefficient: 0
Gravy Index: -.41
Number of Met residues: 9
Percentage of Met residues: 3.24 %
Number of Cys residues: 0
Percentage of Cys residues: 0.00 %

SEQUENCE  amino acids 278 aa
>TM0014  TM0014 methyl-accepting chemotaxis protein, putative
MREREIVDKLTSAFFAENTIISFTSQLDEALTRKLRRMQRRIEEVKERFVNLNRLFQELV
GDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIE
KLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIVEKAR
EILESSQRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSA
EIDSATKVLEETAGGFTTINRVINSVITAQRKLKDLKI

CDS  cDNA 834 bp
   1 atgagagaaa gagaaatcgt ggataaactc acttctgcgt tctttgcaga gaacacgatc    60
  61 atatccttca caagccagct ggacgaagca ctgaccagaa agctgagaag aatgcagcgc   120
 121 agaatagagg aagttaaaga aagatttgtg aatctcaaca gactgtttca ggaactggtg   180
 181 ggagattttc aagcgaaaag tgatcagctc gtctctgtca tccaagacat ggaaaagatc   240
 241 agcgaaaaca tcatggagga gttgaaaaaa tccggaacaa atgtagatca gatcgtcgaa   300
 301 agggtgaaag aagcttcatc ccagatagga gagacccttg aaaacataag atcgatcgaa   360
 361 aagttgattc agaacattat gagaatcgcc agggaaacca acatcctcgc cttgaacgcc   420
 421 accatagagg ctgcgagggc cggagaagcg ggaaaaggct tcatgatcgt agcaaacgag   480
 481 gttcagaatc tatcaaacga aacaaatgaa gtgacaaagc agatcgtcga gaaggccaga   540
 541 gaaatcctcg aatcttcaca aagatccctt gaaaacctcg agttcatggc gaatctgttt   600
 601 gaaacagttg gaaaaaccct ccagaatatg gttcgtttca tggaaaacaa cgtaaagctc   660
 661 cttcaggagg tcagaaactc cctcgatacc tcgaaggagt cactctcaga aaagagtgcg   720
 721 gaaatcgaca gtgcaacgaa ggttctggaa gagactgcag gaggattcac gaccataaac   780
 781 agagttatca actcagtgat caccgctcag agaaaactga aggatctaaa gatt   834

Target constructs
Download sequence in PIR or FASTA format
Chemical properties of sequence with tag

GENE PREDICTION

LEFT END	RIGHT END	FRAME	PREDICTOR	SCORE
12318	13154	3	Glimmer3 score	15.08	good
			Genemark probabilities	.87 .91	good
			GenemarkHMM class	1	good

Notes

The start codon is a ATG/Methionine in most of sequences, but the GTG/V, TTG/L, CTG/I can be the start codons in some cases as expressing in E.coli. The start codon warning is labelled by RED color in sequence(sample: 10174951).

Protein sequence information contains the annotation contents from both of JCSG and SWISS-PROT. The SWISS-PROT/TrEMBL annotation is accessed from SWALL(SPTR) on the EBI SRS server. PDB homologes show both identical and highly similar proteins with released date and protein function.

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