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   TM0034;TM0034
Protein Sequence Comparative Analysis   (PSCA)
 
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TM0034    TM0034            JCSG 281915 Crystal Hit 02-NOV-01

Protein Sequence Information


TOPSAN
JCSG Internal annotations

ACCESSIONTM0034
DESCRIPTIONIron-sulfur cluster-binding protein.
ORGANISMThermotoga maritima
COMMENT 
DR UNIPROT; Q9WXP1_THEMA
DR SPTR; Q9WXP1 (flat text); Q9WXP1 (good view)
DR GenBank; AAD35128
DR Pfam; PF00037; Fer4;
DR Interpro; IPR001450; 4Fe4S_ferredoxin;
DR FFAS; 281915; Fold and function assignment.
DR TVPC; TM0034; Homologs in PDB, JCSG and SG center.
DR OVP; TM0034; Ortholog view popup.
DR TPM; TM0034; Target PDB monitor.
DR FSS; TM0034; Target function coverage.
PROPERTY Residues: 357 aa
Molecule Weight: 38993.28 Dalton
Isoelectric Point: 7.01
Extinction Coefficient: 35870
Gravy Index: -.04
Number of Met residues: 11
Percentage of Met residues: 3.08 %
Number of Cys residues: 12
Percentage of Cys residues: 3.36 %
SEQUENCE  amino acids 357 aa
>TM0034  TM0034 iron-sulfur cluster-binding protein
MPAKVYFTDMTTNPNMNMLQKLELLLKKVELEKIIEKDKFVAVKLHFGEYGNLAFIRPQY
VKIIVDQIKKLGGKPFLTDANTLYTGHRSNAVDHLINAYLNGFTYEVTGAPVIIADGLRG
SDEIKVKIDGNYVKEAKIGAAIALADAIVAVTHFKGHEATGFGGTIKNVGMGSASRAGKM
EQHSESKPYVVEEKCVACGTCAKFCPVGAITVTKVAKIDYEKCIGCGQCIAMCSYGAMSP
KWDSSTDSLSKKMAEYAKAVLKDKKAVFISFIMNISPDCDCWNMNKPPVAPDIGIAVSTD
PVALDQACIDLVLQKTGKDPFLEVHPDVTWKTQLEYAEEIGLGTREYELVKVACDLK

CDS  cDNA 1071 bp
   1 atgccagcga aggtttattt cacagacatg acaaccaacc caaacatgaa catgcttcaa    60
  61 aagttagaac ttcttttgaa gaaagtggaa ctggagaaaa tcatcgaaaa agacaagttc   120
 121 gtggctgtaa aactccattt cggtgaatac ggaaacctcg cattcataag accccagtac   180
 181 gtgaaaatca ttgtggacca gatcaagaaa ctgggtggaa aacctttcct caccgacgcg   240
 241 aacacgctct acaccggcca cagatcgaac gctgtggatc atctgataaa cgcctacctg   300
 301 aacggcttca cctacgaggt gacgggagct cctgtgatca tcgcggatgg tctcagaggt   360
 361 tcagatgaga taaaggtgaa aatagatgga aactacgtaa aagaagcgaa aataggtgcc   420
 421 gcaatagctc ttgcagatgc gatagtcgct gtaacacatt tcaaagggca cgaagcgaca   480
 481 ggttttggtg gaacgataaa aaacgtcgga atgggaagtg catccagagc aggaaagatg   540
 541 gaacaacact ccgaatccaa accgtacgtt gtggaagaaa agtgtgtcgc ctgtggaaca   600
 601 tgtgcgaagt tctgcccggt tggtgcgatt actgtcacaa aagtggcaaa gatcgattac   660
 661 gagaaatgta tcggttgtgg acagtgtatc gccatgtgtt cctacggtgc catgtctcca   720
 721 aaatgggaca gctcgactga ctctttgagt aaaaagatgg ctgaatacgc aaaagcggtt   780
 781 ctcaaagaca agaaagcggt cttcatttcg ttcatcatga acatctctcc agactgcgac   840
 841 tgctggaaca tgaacaaacc tcccgtggct cccgatatcg gaatcgcggt cagtacagat   900
 901 ccagttgctc tggatcaggc ctgtatagat ctcgtccttc aaaaaacggg caaagacccg   960
 961 ttccttgagg ttcacccaga tgtaacctgg aagacacagc tcgaatacgc tgaggagatc  1020
1021 ggtcttggaa cgagagaata cgaactcgtg aaggtggctt gtgatttgaa g  1071
Target constructs
Download sequence in PIR or FASTA format
Chemical properties of sequence with tag
GENE PREDICTION
LEFT END RIGHT END FRAME PREDICTOR SCORE 
34103 35176 2 Glimmer3 score 10.63 poor
Genemark probabilities .93   .94 good
GenemarkHMM class 1 good

Notes

The start codon is a ATG/Methionine in most of sequences, but the GTG/V, TTG/L, CTG/I can be the start codons in some cases as expressing in E.coli. The start codon warning is labelled by RED color in sequence(sample: 10174951).

Protein sequence information contains the annotation contents from both of JCSG and SWISS-PROT. The SWISS-PROT/TrEMBL annotation is accessed from SWALL(SPTR) on the EBI SRS server. PDB homologes show both identical and highly similar proteins with released date and protein function.


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