Basic Development Tools

Basic Development Tools

Last update: Monday, April 16, 2001 1:49 PM

Genomic Resources
C. elegans (current reference version = Wormpep 43 - Other versions at Wormbase)
Proteome:	FASTA Amino acid	Additional files:	Wormpep.table
cDNA:	FASTA Nucleic acid		Wormpep.accession
gDNA:	FASTA genomic DNA		Wormpep.diff
			Wormpep.history
			Wormbase chromosomal DNA
Thermotoga maritima
Proteome:	FASTA Amino acid	Additional files:	ASN.1 file, print form, replaces .prt
cDNA:	FASTA Nucleic acid		GenBank flat file format
.gDNA:	FASTA Coding regions		GenBank summary file format
....			Protein Table
....			Table to assemble genome
....			Unix tar and compressed file of genome
Proteome Analysis at EBI
Proteome Datasets:		C. elegans
		Thermotoga maritima
Proteome analysis:		C. elegans
		Thermotoga maritima
Proteome comparison:		Interactive analysis
Other genome resources
Genomes analyzed at ERGO
GOLD (Genomes On-Line Database) search
Genomes at EBI
Genomes at NCBI
PDB Data
PDB data (DNA and protein) in FASTA format
PDB data (protein only) in FASTA format - Filtered DB from NCBI
Secondary structure data in FASTA format
.
Software
Program	Windows NT Version	Linux Version	Other
SIM4:	n/a	n/a	Source distribution
BLAST:	Executable	Executable	Solaris (Executable)
HMMER:	n/a	Executable	Solaris (Executable) - Source distribution
.
Other
Pfam:	HMM library	Full alignments	Seed alignments


Contact Us