• Home [JCSG Home Page]

• Targets [Targets]
• Target Selection [Target Selection]
• All JCSG Targets Status [Shows the progress of all JCSG targets]
• Active JCSG Target Status [This report give the position of each active protein in the pipelinene]
• Modify Personal List [Register or Modify Personal Target List]
• FTP Our Target List [File Transfer Protocol Service for JCSG]
• BLAST Against Targets [BLAST Against JCSG Targets]
• NIH SGI Targets [NIH Target s]

• About Us [About Us]
• Organization [Organization]
• Calendar [Calendar]
• Job Opportunities [Jobs]
• News Archives [News Archives]
• Conference Schedule [Conference Schedule]
• Acknowledgements [Acknowledgements]

• Links [Links]
• JCSG Technologies

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• JCSG Tools [JCSG Tools]
• Protein Structure Quality [PSQS]
• Structure Validation [Structure Validation]
• Old Structure Validation [Old Structure Validation]
• PSCA [Protein Sequence Comparison Analysis]
• Primer Selection Tool [Automated Primer Prep]
• Scwrl/Mixed Model Server [side chain replacement and mixed models]
• Search Assigned Families [Search Assigned Big PSI-2 Center Families]
• Burnham Tools [Burnham Tools]
• FFAS [FFAS]
• FATCAT
• POSA
• Burnham Servers
• SDSC Tools [SDSC Tools]
• Mulitple Structure Align [Mulitple Structure Align]
• SDSC Tools [SDSC Tools]
• Rocks [Rocks Cluster Software]
• Basic Development Tools

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• NIH Struct. Genomics Ctrs [NIH SG Centers]

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• Publications [Publications]
• JCSG Statistics [JCSG Statistics]
• Family Coverage [Family coverage by SG Centers]

• Internal [Internal Pages]
• Bioinformatics Core [BIC Data Entry]
• Menu Editor [This form allows the user to alter the naviagation menu]
• Create News [Add a news item or announcement]
• Add a Web Update [Add a Web Update]
• Edit Target [Edit Target Local Accession or Name]
• Stop Work on Targets [Stop Work on Targets]
• PDB Upload [PDB Deposition Upload Page]
• Reload Log Files [Reloads a Log File used in Structure Solution]
• Completion Codes [Enter/Edit Completion Codes]
• Register JCSG Member [Form to enter personnel information for employees]
• Assign Security Groups [Assign Security Groups to Users]
• Internal Help [Internal Help Pages]
• Column Headers [Column Header Guidelines]
• Upload Sequences [Upload Sequences]
• Create Targets [Create Targets]
• Add Target Protocol [Add Target Protocol]
• Create SN Entry [Initialize internal data to handle SNs]
• FASTA for FFAS [Generate FASTA files for FFAS]
• Display Cron Jobs [Display Cron Jobs]
• Steering Commitee Report
• gDNA Inventory [Set gDNA Inventory Status]
• Crystallomics Core [Crystallomics Core Data Entry]
• Proposed Targets [List of Released Targets Forwarded for Cloning]
• Activated Targets [Activated Targets]
• PCR Targets [PCR Targets]
• Ligation [Ligation (Amplifer Targets)]
• Directional PCR [Directional PCR (Orientation Targets)]
• Transformation [Transformation (Plasmid Purification Targets)]
• Protein Expression [Protein Expression]
• Protein Purification [Protein Purification]
• Send to Fold Screening [Send to Fold Screening]
• Fold Screening [Enter Fold Screening Data]
• Coarse Screening [Assign a TSRI number to send to Syrrx]
• Crystalization Images [Crystalization Images]
• Fine Screen Targets [Create a fine screen]
• Crystal Mounting [Ship crystals from course or fine screen]

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• Other [Other CC Interfaces]
• Manual Tracking [Manual Tracking]
• Activated Targets [Activated Targets]
• PCR Targets [PCR Targets]
• Ligation [Ligation (Amplifer Targets)]
• Directional PCR [Directional PCR (Orientation Targets)]
• Transformation [Transformation (Plasmid Purificiation)]
• Set Plate Alias [Set Plate Alias]
• GNF Data Upload [GNF Upload of Data from GNF to BART]
• Upload TSRI Xtal Sheets [Upload TSRI spreadsheets from Syrxx]
• Fine Screen (no target) [Create a fine screen without moving targets]
• Get Crystal Screen [Retrieve Crystallization Screen]
• Crystal Image Search [Crystal Image Search]
• Structure Determination [Structure Determination Core Data Entry]
• Download Beamline Report [SDC Receiving from GNF\TSRI -Beamline Journal]
• Upload Beamline Report [Upload Beamline File for Data Processing]
• Structure Solution [Structure Solution Tracking]
• Cassette/Dewar Tracking [Inventory tracking tool for dewars and cassettes/pucks]
• Solved Target Feedback [Solved Target Feecback Report]
• Add a Container [Add a dewar, puck or cassette to the inventory module]
• Administration Core [Refiner Management Tools]
• Register a Refiner [Insert a Refiner into the tracking database]
• Refiner Assignment [Console to assign crystals dataset to refiners]
• Refiner Check In/Out
• Revoke Assignment [Remove an Assignment from Refiner]
• SN Summary Report [Download Structure Notes Report in Excel or Text Format]
• Create/Edit Conference [Create or Edit Conferences]

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• Job Requests [Job Requests]
• Add Job Request [Add Job Request]
• Display Job Requests [Display Job Requests]
• Reports [Internal Reports]
• Report Index
• Target History [Target History Report]
• Report Archives [A number of archived reports]
• Stage Target Report [Stage Target Report]
• Routing Flag Alert [Routing FLag Alert]
• Internal Target Status [Internal Target Status List]
• Target Protocols [List Target Protocols]
• Target Crystal Report [Crystal Screening & Diffraction Detail Report]
• Active Crystal Report [Active Crystals stored at the Beamline]
• Get Models [Get Homologous Models base on a Solved Structure]
• TSRI Crystal Count [Number of TSRI Targets in Various Stages]
• Structure Status Report [This report list various characteristics of crystals that have been data collected and beyond]
• TVP Report [Target vs PDB Report]
• Xtal Screen Activity Rpt [User could query database for Xtal Screen Activity for a specified time]
• Internal Targets Stage [Internal Targets Last Stage]
• QC Returns Report [Details of returns to refinement from QC]
• Misc. Reports [Misc. Internal Reports]
• Dali/Fatcat search [new fold search against Dali/Fatcat servers]
• Coverage Reports [Coverage Reports]
• JCSG Family Coverage [JCSG Family Coverage]
• Family Coverage Graphs [Coverage of Families by PSI-2]
• Family Coverage Report [All SG Family Coverage Report]
• TM Coverage [Thermotoga Maritima Coverage]
• JCSG2 Scoreboard
• Filter Beamline Report [Filter Beamline Report]
• Targets Need Annotations
• SG Deposition Rates
• Duplicate Screens [Duplicate Screens for Same PID]
• Charts
• Crystal Shipping
• Stage Progression
• Tools [Internal Tools]
• Ortholog View Popup [This program displays orthologs of target]
• Value Finder [Value Finder]
• FASTA File Generator [This program will create a FASTA formatted file]
• PDBSGT Search [This program searches homologs of protein sequences in PDB and SGT.]
• Target Ortholog Group [This program displays target orthologs in group.]
• TVPC Search [This program displays constructs and orthologs of target]
• PDB-Align (P-FAT) [sequence/structure comparison]
• Target Viewer [Target Viewer]
• PDB file retrieval [retrive the pdb file for a pdb id ,or the latest file available]
• PDB DEP Management System [PDB DEP Management System]
• ID Search [Search for targets by multiple ids]
• User Info Setup [Edit your alerts that show up in the banner]
• Protein Annotation [Protein annotation system]
• Publications [Internal Publications]
• Presentations [Internal Presentations]
• Find Structure Note [Search for a structure note]
• Structure Notes [Structure Notes]
• Potential Author Status [Potential Author Status]
• Follow-up Papers [Follow-up papers]
• Documentation
• Downloads [downloads dir]
• RSS Feeds
• Admin Cron [Cron jobs]
• Admin Errors [Errors found]
• Admin Jobs
• Admin Security
• Dewar Tracking [Dewar Tracking Notifications]
• GNF Data Upload [GNF data upload notifications]
• SSTS tracking
• Solved Target Feedback
• Structure Note
• TOPSAN
• General
• System Generated Emails [View emails generated by the JCSG system]