JCSG Publications
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Methodology & Technology Development
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2008 |
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Zhang Q, Horst R, Geralt M, Ma X, Hong WX, Finn MG, Stevens RC, Wuthrich K.
"Microscale NMR screening of new detergents for membrane protein in structural biology."
Journal of the American Chemical Society, 130: 7357-7363 (2008).
PMID: 18479092 |
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Structural Genomics Consortium; China Structural Genomics Consortium; Northeast Structural Genomics Consortium, Gräslund S,
Nordlund P, Weigelt J, Bray J, Gileadi O, Knapp S, Oppermann U, Arrowsmith C, Hui R, Ming J, dhe-Paganon S, Park HW, Savchenko A, Yee A, Edwards A, Vincentelli R, Cambillau C, Kim R, Kim SH, Rao Z, Shi Y, Terwilliger TC, Kim CY, Hung LW, Waldo GS, Peleg Y, Albeck S, Unger T, Dym O, Prilusky J, Sussman JL, Stevens RC, Lesley SA, Wilson IA, Joachimiak A, Collart F, Dementieva I, Donnelly MI, Eschenfeldt WH, Kim Y, Stols L, Wu R, Zhou M, Burley SK, Emtage JS, Sauder JM, Thompson D, Bain K, Luz J, Gheyi T, Zhang F, Atwell S, Almo SC, Bonanno JB, Fiser A, Swaminathan S, Studier FW, Chance MR, Sali A, Acton TB, Xiao R, Zhao L, Ma LC, Hunt JF, Tong L, Cunningham K, Inouye M, Anderson S, Janjua H, Shastry R, Ho CK, Wang D, Wang H, Jiang M, Montelione GT, Stuart DI, Owens RJ, Daenke S, Schütz A, Heinemann U, Yokoyama S, Büssow K, Gunsalus KC.
"Protein production and purification."
Nature Methods, 5: 135-146 (2008).
PMID: 18235434 |
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Fox BG, Goulding C, Malkowski MG, Stewart L, Deacon A.
"Structural genomics: from genes to structures with valuable materials and many questions between,"
Nature Methods, 5(2): 129-132 (2008). |
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Burley SK, Joachimiak A, Montelione GT, Wilson IA.
"Contributions to the NIH-NIGMS Protein Structure Initiative from the PSI Production Centers."
Structure, 16: 5-11 (2008).
PMID: 18184575
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Schwarzenbacher R, Godzik A, Jaroszewski L.
"The JCSG MR pipeline: optimized alignments, multiple models and parallel searches,"
Acta Crystallographica Section D: Biological Crystallography, 64(Pt 1): 133-140 (2008).
PMID: 18094477 |
2007 |
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Abola E, Carlton DD, Kuhn P, Stevens RC.
"Five Years of Increasing Structurall Biology Throughput A Retrospective Analysis."
In Structure-based Drug Discovery. H. Jhoti & A. Leach (eds), Springer (Netherlands), 1-26 (2007).
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Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, and Godzik A.
"Using an alignment of fragments strings for comparing protein structures."
Bioinformatics, 23:e219-224 (2007).
PMID: 17237095 |
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Rodrigues AP, Grant BJ, Godzik A, Friedberg I.
"The 2006 automated function prediction meeting,"
BMC bioinformatics, 8 Suppl 4 (2007).
PMID: 17570143. |
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Godzik A, Jambon M, Friedberg I.
"Computational protein function prediction: Are we making progress?"
Cell Mol Life Sci., 64: 2505-2511 (2007).
PMID: 17611711 |
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Klock HE, Koesema EJ, Knuth MW, Lesley SA.
"
Combining the polymerase incomplete primer extension method for cloning and mutagenesis with microscreening to accelarate
structural genomics efforts."
Proteins: Structure, Function, and Bioinformatics, 71: 982-994 (2007). |
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Zhang Y, Stec B, Godzik A.
"Between order and disorder in protein structures: analysis of "dual personality" fragements in protein,"
Structure, 15: 1141-1147 (2007).
PMID: 17850753. |
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Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A.
"XtalPred: a web server for prediction of protein crystallizability,"
Bioinformatics, 23: 3403-3505 (2007).
PMID: 17921170 |
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Lipfert J, Columbus L, Chu VB, Lesley SA, Doniach S.
"Size and shape of detergent micelles determined by small-angle X-ray scattering,"
Journal of Physical Chemistry, 111(43): 12427-12438 (2007).
PMID: 17924686 |
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Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A.
"The challenge of protein structure determination- lessons from structural genomics,"
Protein Science, 16: 2472-2482 (2007).
PMID: 17962404 |
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Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W,
Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, Joachimiak MP, van Belle C, Chandonia JM, Soergel DA,
Zhai Y, Natarajan K, Lee S, Raphael BJ, Bafna V, Friedman R, Brenner SE, Godzik A, Eisenberg D, Dixon JE, Taylor SS,
Strausberg RL, Frazier M, Venter JC.
"The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families."
PLoS Biol., 5(3):e16 (2007).
PMID: 17355171 |
2006 |
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Canaves JM. Tools for Computational Protein Annotation and Functional Assignment.
In: In Silico technology in drug target identification and validation," edited by D. León and S. Markel.
New York; Marcel Dekker, Inc. (2006) |
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Chamberlain PP, Klock HE, McMullan D, DiDonato M, Kreusch A, Lesley SA, Spraggon G.
"Advances in High-Throughput methods for crystallizing proteins."
Biotechnology & Genetic Engineering Reviews, 23: 1-19 (2006). |
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Columbus L, Lipfert J, Klock H, Millett I, Doniachi S, Lesley SA.
"Expression, purification, and characterization of Thermotoga maritima membrane proteins for structure determination."
Protein Sci. 15:961-975 (2006).
PMID: 16597824 |
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Etezady-Esfarjani T, Herrmann T, Horst R, Wüthrich K.
"Automated protein NMR structure determination in crude cell-extract."
J Biomol NMR, 34(1): 3-11 (2006).
PMID: 16505959 |
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Friedberg I, Jambon M, Godzik A.
"New avenues in protein function prediction."
Protein Sci., 15: 1527-1529 (2006).
PMID: 16731984 |
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Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesley SA, Palsson BO, Agarwalla S.
"Experimental and computational assessment of conditionally essential genes in Escherichia coli."
J Bacteriol., 188: 8259-8271 (2006).
PMID: 17012394 |
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Zhang Z, Sauter NK, van den Bedem H, Snell G, Deacon AM.
"Automated diffraction image analysis and spot searching for high-throughput crystal screening."
J Appl. Cryst., 39: 112-119 (2006).
doi:10.1107/S0021889805040677 |
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Zhi D, Krishna SS, Cao H, Pevzner P, Godzik A.
"Representing and comparing protein structures as paths in three-dimensional space."
BMC Bioinformatics, 7: 460 (2006).
PMID: 17052359 |
| 2005 |
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Collins B, Stevens RC, Page R.
"Crystallization Optimum Solubility Screening: using crystallization results to identify the optimal buffer for protein
crystal formation."
Acta Crystallograph Sect F Struct Biol Cryst Commun., 61(Pt 12): 1035-1038 (2005).
PMID: 16511228
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Jaroszewski L, Rychlewski L, LI Z, Li W, Godzik A.
"FFAS03: a server for profile-profile sequence alignments."
Nucleic Acids Research 33(Web Server issue): W284-8 (2005).
PMID: 15980471 |
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Klock HE, White A, Koesema E, Lesley SA.
"Methods and results for semi-automated cloning using integrated robotics."
J. Struct. Funct. Genom., 6: 89-94 (2005).
PMID: 16211504 |
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Lesley SA, Wilson IA.
"Protein production and crystallization at the Joint Center for Structural Genomics."
J. Struct. Funct. Genom., 6: 71-79 (2005).
PMID: 16211502 |
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McMullan D, Canaves JM, Quijano K, Abdubek P, Nigoghossian E, Haugen J, Klock HE, Vincent J, Hale J, Paulsen J, Lesley SA.
"High-throughput protein production for X-ray crystallography and use of size exclusion chromatography to validate or
refute compuational biological unit predictions."
J. Struct. Funct. Genom., 6: 135-141 (2005).
PMID: 16211510 |
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Page R, Deacon AM, Lesley SA, Stevens RC.
"Shotgun Crystallization Strategy for Structural Genomics II: Crystallization Conditions that Produce High Resolution
Structure for T. maritima Proteins."
J. Struct Funct. Genom., 6: 209-217 (2005).
PMID: 16211521 |
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Page R, Peti W, Wilson IA, Stevens RC, Wüthrich K.
"NMR screening and crystal quality of baterially expressed prokaryotic and eukaryotic proteins in a structural
genomics pipeline."
Proc Natl Acad Sci USA 102: 1901-1905 (2005).
PMID: 15667718 |
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Peti W, Page R, Moy K, O'neil-Johnson M, Wilson IA, Stevens RC, Wüthrich K.
"Towards miniaturization of a structural genomics pipeline using micro-expression and microcoil NMR."
J Struct Funct Genomics, 6: 259-267 (2005).
PMID: 16283429 |
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Van den Bedem H, Lotan I, Latombe JC, Deacon AM.
"Real-space protein-model completion in inverse-kinematics approach."
Acta Crystallogr D Biol Crystallogr 61: 2-13 (2005).
PMID: 15608370 |
| 2004 |
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Bern M, Goldberg D, Stevens RC, Kuhn P.
"Automatic classification of protein crystallization images using a curve-tracking algorithm."
J. Appl. Cryst., 37: 279-287 (2004).
doi:10.1107/S0021889804001761. |
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Bourne PE, Allerston CKJ, Krebs W, Li W, Shindyalov IN, Godzik A, Friedberg I, Liu T, Wild D, Hwang S, Gharhramani Z, Chen L,
Westbrook J.
"The status of structural genomics defined through the analysis of current targets and structures."
Pacific Symposium on Biocomputing 9: 375-386 (2004).
doi:10.1142/979812704856_0036.
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Canaves JM, Morse A, West B.
"A PCR primer selection tool optimized for high-throughput proteomics and structural genomics."
Biotechniques, 36: 1040-1042 (2004).
PMID: 15211755. |
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Canaves JM, Page R, Wilson IA, Stevens RC.
"Protein biophysical properties that correlate with crystallization success in Thermotoga maritima: maximum clustering strategy forstructural genomics."
J Mol Biol., 344: 977-991 (2004).
PMID: 15544807 |
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DiDonato M, Deacon AM, Klock HE, McMullan D, Lesley SA.
"A scaleable and integrated crystallization pipeline applied to mining the Thermotoga maritima proteome."
J Struct Funct Genomics, 5: 133-146 (2004).
PMID: 15263852. |
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Friedberg I, Jaroszewski L, Ye Y, Godzik A.
"The interplay of fold recognition and experimental structure determination in structural genomics."
Curr Opin Struct Biol., 14: 307-312 (2004).
PMID: 15193310. |
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Kreusch A. & SA Lesley.
"High Throughput Cloning, Expression and Purification Technologies".
In Genomics, Proteomics, and Vaccines, edited by G. Grandi. West Sussex, England; John Wiley & Sons, Ltd.,
pp. 171-182 (2004). |
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Page R, Moy K, Sims EC, Velasquez J, McManus B, Grittini C, Clayton TL, Stevens RC.
"Scalable high-throughput micro-expression device for recombinant proteins."
Biotechniques, 37: 364, 366, 368 passim (2004).
PMID: 15470889. |
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Page R, Stevens RC.
"Crystallization data mining in structural genomics: using positive and negative results to optimize protein crystallization screens."
Methods, 34: 373-389 (2004).
PMID: 15325655. |
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Pantazatos D, Kim JS, Klock HE, Stevens RC, Wilson IA, Lesley SA, Woods Jr VL.
"Rapid refinement of crystallographic protein construct definition employing enhanced hydrogen/deuterium exchange MS."
Proc. Natl. Acad. Sci. U.S.A. 101: 751-756 (2004).
PMID: 14715906. |
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Peti W, Etezady-Esfarjani T, Herrmann T, Klock H, Lesley SA, Wüthrich K.
"NMR for structural proteomics of Thermotoga maritima: Screening and structure determination."
J. Struct. Funct. Genom., 5: 205-215 (2004).
PMID: 15263836. |
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Schwarzenbacher R, Godzik A, Grzechnik SK, Jaroszewski L.
"The importance of alignment accuracy for molecular replacement."
Acta Crystallogr D Biol Crystallogr, 60: 1229-1236 (2004).
PMID: 15213384. |
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Snell G, Cork C, Nordmeyer R, Cornell E, Meigs G, Yegian D, Jaklevic J, Jin J, Stevens RC, Earnest T.
"Automated sample mounting and alignment system for biological crystallography at a synchrotron source."
Structure, 12: 537-545 (2004).
doi:10.1016/j.str.2004.03.011 |
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Spraggon G, Pantazatos D, Klock HE, Wilson IA, Woods VL Jr, Lesley SA.
"On the use of DXMS to produce more crystallizable proteins: structures of the T. maritima proteins TM0160 and TM1171."
Protein Sci, 13: 3187-99 (2004).
PMID: 15557262. |
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Stevens RC.
"Long live structural biology."
Nat Struct Mol Biol., 11: 293-295 (2004).
PMID: 15048098 |
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Ye Y, Godzik A.
"Comparative analysis of protein domain organization."
Genome Res., 14: 343-353 (2004).
PMID: 14993202. |
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Ye Y, Godzik A.
"Database searching by flexible protein structure alignment."
Protein Science, 13: 1841-1850 (2004).
PMID: 15215527 |
| 2003 |
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Godzik A. Canaves JM. Grzechnik SK. Jaroszewski L. Morse A. Ouyang J. Wang X. West B. Wooley J.
"Challenges of Structural Genomics: bioinformatics."
Biosilico, 1: 36-41 (2003). |
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Hosfield D, Palan J, Hilgers M, Scheibe D, McRee D, Stevens RC.
"A fully integrated protein crystallization platform for small molecule drug discovery."
J Struct Biol., 142: 207-217 (2003).
PMID: 12718932 |
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Liu T, Rojas A, Ye Y, Godzik A.
"Homology modeling provides insights into the binding mode of PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED
domain family."
Protein Sci., 12: 1872-1881 (2003).
PMID: 12930987 |
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Page R, Grzechnik SK, Canaves JM, Spraggon G, Kreusch A, Kuhn P, Stevens RC, Lesley SA.
"Shotgun crystallization strategy for structural genomics: an optimized two-tiered crystallization screen against the Thermotoga maritima proteome."
Acta Crystallogr D Biol Crystallogr, 59: 1028-1037 (2003).
PMID: 12777766 |
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Stevens RC.
"The cost and value of three-dimensional protein structure."
Drug Discovery World, 4: 35-48 (2003). |
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Weselak M. Patch MG. Selby TL. Knebel G. Stevens RC.
"Robotics for Automated Crystal Formation and Analysis"
Methods Enzymol., 368: 45-76 (2003).
PMID: 14674268 |
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Ye Y, Godzik A.
"Flexible structure alignment by chaining aligned fragment pairs allowing twists."
Bioinformatics Suppl 2: ii246-ii255 (2003).
PMID: 14534198 |
| 2002 |
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Chiu HJ. McPhillips S. Sharp K. Eriksson T. Sauter N. Soltis M. Kuhn P.
"Collaboratory in Macromolecular Crystallography at SSRL."
Proceedings in Network Learning (2002). |
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Cohen AE. Ellis PJ. Miller MD. Deacon AM. Phizackerley RP.
"An automated system to mount cryo-cooled protein crystals on a synchrotron beamline, using compact sample cassettes and a small-scale
robot."
Journal of Applied Crystallography. 35: 720-726 (2002). |
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Kuhn P. Wilson K. Patch MG. Stevens RC.
"The genesis of high-throughput structure-based drug discovery using protein crystallography [Review]."
Current Opinion in Chemical Biology. 6: 704-710 (2002). |
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Lesley SA, Graziano J, Cho CY, Knuth M, Klock HE.
"Gene Expression Response to Misfolded Protein as a Screen for Soluble Recombinant Protein."
Protein Eng., 15: 153-160 (2002).
PMID: 11917152 |
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Lesley SA, Kuhn P, Godzik A, Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A,
Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J,
Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC.
"Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline."
Proc Natl Acad Sci USA, 99: 11664-11669 (2002).
PMID: 12193646 |
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McPhillips TM, McPhillips SE, Chiu HJ, Cohen AE, Deacon AM, Ellis PJ, Garman E, Gonzalez A, Sauter NK, Phizackerley RP,
Soltis SM, Kuhn P.
"Blu-Ice and the Distributed Control System: software for data acquisition and instrument control at macromolecular crystallography beamlines."
J Synchrotron Radia, 9: 401-406 (2002). |
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Santarsiero BD, Yegian DT, Lee CC, Spraggon G, Gu J, Scheibe D, Uber DC, Cornell EW, Nordmeyer RA, Kolbe WF, Jin J, Jones AL,
Jaklevic JM, Schultz PG, Stevens RC.
"An Approach to Rapid Protein Crystallization using Nanodroplets."
J Appl Crystallography, 35: 278-281 (2002). |
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Selby TL. Stevens RC.
"Bioinformatics and high-throughput protein production for structural genomics."
In: Gene Cloning and Expression Technologies. edited by M.P. Weiner & Q. Lu. Westborough, MA;
Biotechniques Press, pp. 281-304 (2002). |
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Spraggon G. Lesley SA. Kreusch A. Priestle JP.
"Computational analysis of crystallization trials."
Acta Cryst D, 58: 1915-1923 (2002). |
| 2001 |
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Lesley SA.
"High-throughput Proteomics: Protein Expression and Purification in the Postgenomic World."
Prot Exp Purif, 22: 159-164 (2001). |
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Stevens RC. Wilson IA.
"Industrializing structural biology"
Science, 293: 519-520 (2001).
PMID: 11463918 |
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Stevens RC. Yokoyama S. Wilson IA.
"Global efforts in structural genomics."
Science, 294: 89-92 (2001).
PMID: 11588249 |
| 2000 |
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Abola E. Kuhn P. Earnest T. Stevens RC.
"Automation of X-ray crystallography."
Nature Structural Biology, Structural Genomics Supplement 7: 973-977 (2000). |
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Structural Papers |
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| Structural Analysis |
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Chernyshev A, Fleischmann T, Koehn EM, Lesley SA, Kohne A.
"The relationships between oxidase and synthase activities of flavin dependent thymidylate synthase (FDTS)."
Chem Commun (Camb)., 2007: 2861-2863 (2007).
PMID: 17609801 |
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Grynberg M, Erlandsen H and A Godzik.
"HEPN: a common domain in baterial drug resistance and human neurodegenerative proteins."
TRENDS in Biochemical Sciences, 28: 224-226 (2003). |
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Grynberg M, Godzik A.
"NERD: a DNA processing domain present in the anthrax virulence plasmid pX01."
Trends in Biochem Sci., 29: 106-110 (2004).
PMID: 15055202 |
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Grynberg M, Jaroszewski L, Godzik A.
"Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization."
BNC Bioinformatics, 4: 46 (2003).
PMID: 14536023 |
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Kreusch A, Spraggon G, McMullan D, Klock HE, Warner I, Lesley SA.
"Structure analysis of peptide deformylases from Streptococcus pneumoniae, Staphylococcus aureus, Thermotoga maritima and
Pseudomonas aeruginosa: Snapshots of the oxygen-mediated inactiviation of peptide deformylase."
J Mol Biol., 330: 309-321 (2003).
PMID: 12823970 |
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Robinson-Rechavi M, Alibes A, Godzik A.
"Contribution of Electrostatic Interactions, Compactness and Quaternary Structure to Protein Thermostability: Lessons from Structural Genomics of Thermotoga maritima."
J Mol Biol., 356: 547-557 (2006).
PMID: 16375925 |
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Robinson-Rechavi M, Godzik A.
"Structural genomics of Thermotoga maritima proteins shows that contact order is a major determinant of protein thermostability."
Structure (Camb),, 13: 857-860 (2005).
PMID: 15939017 |
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| Function |
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Agrawal N, Lesley SA, Kuhn P, Kohen A.
"Mechanistic studies of a flavin-dependent thymidylate synthase complementing protein."
Biochemistry, 43: 10295-10301 (2004). |
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Canaves JM.
"Predicted role for the archease protein family based on structural and sequence analysis of TM1083 and MTH1598, two proteins
structurally characterized through structural genomics efforts".
Proteins: Structure, Function and Bioinformatics, 56: 19-27 (2004). |
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Mason A, Agrawal N, Washington T, Lesley SA, Kohne A.
"A lag-phase in the reduction of flaving dependent thymidylate synthase (FDTS) revealed a mechanistic missing link."
Chem. Commun., 16: 1781-1783 (2006). |
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Mathews II, Deacon AM, Canaves JM, McMullan D, Lesley SA, Agarwalla S, Kuhn P.
"Functional analysis of substrate and cofactor complex structures of a thymidylate synthase-complementing protein."
Structure, 11: 677-690 (2003).
PMID: 12791256 |
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| Structures |
| In press |
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Chatterjee A, Johnson MA, Serrano P, Pedrini B, Wüthrich K.
"NMR assignment of the domain 513-651 from the SARS-CoV nonstructural protein nsp3."
Biomol. NMR Assign., in press (2007).
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| 2008 |
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Axelrod HL, McMullan D, Krishna SS, Miller MD, Elsliger MA, Abdubek P, Ambing E, Astakhova T, Carlton D, Chiu HJ, Clayton T, Duan L, Feuerhelm J, Grzechnik SK, Hale J, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rife CL, van den Bedem H, Weekes D, White A, Wolf G,
Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.
"Crystal structure of AICAR transformylase IMP cyclohydrolase (TM1249) from Thermotoga maritima at 1.88 A resolution."
Proteins: Structure, Function, and Bioinformatics, 71: 1042-1049 (2008).
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Kozbial P, Xu Q, Chiu HJ, McMullan D, Krishna SS, Miller MD, Abdubek P, Acosta C, Astakhova T, Axelrod HL, Carlton D,
Clayton T, Deller M, Duan L, Elias Y, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Han GW, Jaroszewski L, Jin KK,
Klock HE, Knuth MW, Koesema E, Kumar A, Marciano D, Morse AT, Murphy KD, Nigoghossian E, Okach L, Oommachen S, Reyes R,
Rife CL, Spraggon G, Trout CV, van den Bedem H, Weekes D, White A, Wolf G, Zubieta C, Hodgson KO, Wooley J, Deacon AM,
Godzik A, Lesley SA, Wilson IA.
"Crystal structures of MW1337R and lin2004: Representatives of a novel protein family that adopt a four-helical bundle fold."
Proteins: Structure, Function, and Bioinformatics, 71: 1589-1596 (2008).
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Mathews II, McMullan D, Miller MD, Canaves JM, Elsliger MA, Floyd R, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, McPhillips TM, Morse AT, Quijano K, Rife CL, Schwarzenbacher R, Spraggon G, Stevens RC, van den Bedem H, Weekes D, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.
"Crystal structure of 2-keto-3-deoxygluconate kinase (TM0067) from Thermotoga maritima at 2.05 A resolution."
Proteins: Structure, Function, and Bioinformatics, 70: 603-608 (2008).
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Xu Q, Kozbial P, McMullan D, Sri Krishna S, Brittain SM, Ficarro SB, Didonato M, Miller MD, Abdubek P, Axelrod HL, Chiu HJ,
Clayton T, Duan L, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Han GW, Jaroszewski L, Klock HE, Morse AT, Nigoghossian E, Paulsen J, Reyes R, Rife CL, van den Bedem H, White A, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.
"Crystal structure of an ADP-ribosylated protein with a cytidine deaminase-like fold, but unknown function (TM1506), from
Thermotoga maritima at 2.70 A resolution."
Protein: Structure, Function, and Bioinformatics, 71: 1546-1552 (2008).
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| 2007 |
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Almeida MS, Johnson MA, Herrmann T, Geralt M, Wüthrich K.
"Novel β-barrel Fold in the Nuclear Magnetic Resonance Structure of the Replicase Nonstructural Protein 1 from the Severe
Acute Respiratory Syndrome Coronavirus."
J Virol, 81: 3151-3161 (2007).
PMID: 17202208 |
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Krishna SS, Tautz L, Xu Q, McMullan D, Miller MD, Abdubek P, Ambing E, Astakhova T, Axelrod HL, Carlton D, Chiu HJ, Clayton T, Didonato M, Duan L, Elsliger MA, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW,
Koesema E, Morse AT, Mustelin T, Nigoghossian E, Oommachen S, Reyes R, Rife CL, Bedem HV, Weekes D, White A, Hodgson KO,
Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.
"Crystal structure of NMA1982 from Neisseria meningitidis at 1.5Å resolution provided a structural scaffold for non
classical, eukaryotic-like pohsphatases."
Proteins: Structure, Function, Bioinformatics, 69: 415-421 (2007).
PMID: 17636569 |
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Mathews II, McMullan D, Miller MD, Canaves JM, Elsliger MA, Floyd R, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, McPhillips TM, Morse AT, Quijano K, Rife CL, Schwarzenbacher R, Spraggon G, Stevens RC, van den Bedem H, Weekes D, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.
"Crystal structure of 2-keto-3-deoxygluconate kinase (TM0067) from Thermotoga maritima at 2.05 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 70: 603-607 (2007).
PMID: 18004772 |
|
Premkumar L, Rife CL, Sri Krishna S, McMullan D, Miller MD, Abdubek P, Ambing E, Astakhova T, Axelrod HL, Canaves JM,
Carlton D, Chiu HJ , Clayton T, DiDonato M, Duan L, Elsliger MA, Feuerhelm J, Floyd R, Grzechnik SK, Hale J, Hampton E,
Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kovarik JS, Kreusch A, Levin I, McPhillips TM,
Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rezezadeh F, Rodionov D, Schwarzenbacher R,
Spraggon G, van den Bedem H, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.
"Crystal structure of TM1030 from Thermotoga maritima at 2.3 Å resolution reveals molecular details of its transcription
repressor function."
Proteins: Structure, Function, and Bioinformatics, 68: 418-424 (2007).
PMID: 17444523 |
|
Serrano P, Johnson MA, Almeida MS, Horst R, Herrmann T, Joseph JS, Neuman BW, Subramanian V, Saikatendu KS, Buchmeier MJ,
Stevens RC, Kuhn P, Wüthrich K.
"NMR Structure of the N-terminal Domain of the Nonstructural Protein 3 from the SARS Coronavirus."
J Virol., 81: 12049-12060, (2007).
PMID: 17728234 |
|
Weekes D, Miller MD, Krishna SS, McMullan D, McPhillips TM, Acosta C, Canaves JM, Elsliger MA, Floyd R, Grzechnik, SK, Jaroszewski L,
Klock HE, Koesema E, Kovarik JS, Kreusch A, Morse AT, Quijano K, Spraggon G, Van den Bedem H, Wolf G, Hodgson KO, Wooley J,
Deacon AM, Godzik A, Lesley SA, Wilson IA.
"Crystal structure of a transcription regulator (TM1602) from Thermotoga maritima at 2.3 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 67: 247-252 (2007).
PMID: 17256761 |
|
Xu Q, Saikatendu KS, Krishna SS, McMullan D, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod HL, Carlton D,
Chiu HJ, Clayton T, Didonato M, Duan L, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J,
Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Miller MD, Morse AT, Nigoghossian E, Okach L, Oommachen S,
Paulsen J, Reyes R, Rife CL, Schwarzenbacher R, van den Bedem H, White A, Wolf G, Hodgson KO, Wooley J, Deacon AM,
Godzik A, Lesley SA, Wilson IA.
"Crystal structure of MtnX phosphatase from Bacillus subtilis at 2.0 Å resolution provides a structural basis for
bipartite phosphomonoester hydrolysis of 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate."
Proteins: Structure, Function, and Bioinformatics, 69: 433-439 (2007).
PMID: 17654724 |
|
Zubieta C, Joseph R, Sri Krishna S, McMullan D, Kapoor M, Axelrod HL, Miller MD, Abdubek P, Acosta C, Astakhova T,
Carlton D, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Han GW,
Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Kumar A, Marciano D, Morse AT, Murphy KD, Nigoghossian E,
Okach L, Oommachen S, Reyes R, Rife CL, Schimmel, Trout CV, van den Bedem H, Weekes D, White A, Xu Q, Hodgson KO,
Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.
"Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA."
Proteins: Structure, Function, and Bioinformatics, 69: 234-243 (2007).
PMID: 17654547 |
|
Zubieta C, Krishna SS, Kapoor M, Kozbial P, McMullan D, Axelrod HL, Miller MD, Abdubek P, Ambing E, Astakhova T, Carlton D,
Chiu HJ, Clayton T, Deller MC, Duan L, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Hampton E, Han GW,
Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kumar A, Marciano D, Morse AT, Nigoghossian E, Okach L, Oommachen S, Reyes R,
Rife CL, Schimmel P, Bedem HV, Weekes D, White A, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.
"Crystal structure of two novel dye-decolorizing peroxidases reveal a β-barrel fold with a conserved heme-binding motif."
Proteins: Structure, Function, and Bioinformatics, 69: 223-233 (2007).
PMID: 17654545 |
|
Zubieta C, Krishna SS, McMullan D, Miller MD, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod HL, Carlton D, Chiu HJ,
Clayton T, Deller M, Didonato M, Duan L, Elsliger MA, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Jaroszewski L,
Jin KK, Klock HE, Knuth MW, Koesema E, Kumar A, Marciano D, Morse AT, Nigoghossian E, Oommachen S, Reyes R, Rife CL,
Bedem HV, Weekes D, White A, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.
"Crystal structure of homoserine O-succinyltransferase from Bacillus cereus at 2.4 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 68: 999-1005 (2007).
PMID: 17546672 |
| 2006 |
|
Almeida MS, Johson MA, Wüthrich K.
"NMR assignment of the SARS-CoV protein nsp1."
J Biomol NMR, 36(Supp 1): 46 (2006).
PMID: 16821128 |
|
DiDonato M, Krishna SS, Schwarzenbacher R, McMullan D, Agarwalla S, Brittain SM, Miller MD, Abdubek P, Ambing E, Axelrod HL,
Canaves JM, Chiu HJ, Deacon AM, Duan L, Elsliger MA, Godzik A, Grzechnik SK, Hale J, Hampton E, Haugen J, Jaroszewski L, Jin KK,
Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Lesley SA, Levin I, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J,
Quijano K, Reyes R, Rife CL, Spraggon G, Stevens RC, Van den Bedem H, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of 2-phosphosulfolactate phosphatase (ComB) from Clostridium acetobutylicum at 2.6 Å resolution reveals a new
fold with a novel active site."
Proteins: Structure, Function, and Bioinformatics, 65: 771-776 (2006). |
|
DiDonato M, Krishna SS, Schwarzenbacher R, McMullan D, Jaroszewski L, Miller MD, Abdubek P, Agarwalla S, Ambing E, Axelrod H, Biorac
T,
Chiu HJ, Deacon AM, Elsliger MA, Feuerhelm J, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Haugen J, Hornsby M, Klock HE,
Knuth MW, Koesema E, Kreusch A, Kuhn P, Lesley SA, Moy K, Nigoghossian E, Okach L, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G,
Stevens RC, Van den Bedem H, Velasquez J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of a single-stranded DNA-binding protein (TM0604) from Thermotoga maritima at 2.60 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 63: 256-260 (2006). |
|
Eshaghi S, Niegowski D, Kohl A, Martinez MD, Lesley SA, Nordlund P.
"Crystal structure of a divalent metal ion transporter CorA at 2.9 Å resolution."
Science, 313: 353-357 (2006). |
|
| Etezady-Esfarjani T, Placzek WJ, Herrmann T, Wüthrich K.
"Solution structures of the putative anti-sigma-factor antagonist TM1442 from Thermotoga maritima
in the free and the phosphorylated states."
Magn Reson Chem., 44: S61-S70 (2006).
PMID: 16826544 |
|
Han GW, Sri Krishna S, Schwarzenbacher R, McMullan D, Ginalski K, Elsliger MA, Brittain SM, Abdubek P, Agarwalla S, Ambing E, Astakh
ova T,
Axelrod H, Canaves JM, Chiu HJ, Didonato M, Grzechnik SK, Hale J, Hampton E, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesem
a E,
Kreusch A, Kuhn P, Miller MD, Morse AT, Moy K, Nigoghossian E, Oommachen S, Ouyang J, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G,
Stevens RC,
van den Bedem H, Velasquez J, Wang X, West B, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.
"Crystal structure of the ApbE protein (TM1553) from Thermotoga maritima at 1.58 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 64(4): 1083-1090 (2006). |
|
Jin KK, Krishna SS, Schwarzenbacher R, McMullan D, Abdubek P, Agarwalla S, Ambing E, Axelrod H, Canaves JM, Chiu HJ, Deacon AM,
Didonato M, Elsliger MA, Feuerhelm J, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Haugen J, Hornsby M, Jaroszewski L, Klock H
E, Knuth MW, Koesema E, Kreusch A, Kuhn P, Lesley SA, Miller MD, Moy K, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rife C, Stevens RC, Spraggon G, Van den Bedem H, Velasquez J, White A, Wolf G, Han GW, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of TM1367 from Thermotoga maritima at 1.90 Å resolution reveals an atypical member of the cyclophilin
(peptidylprolyl isomerase) fold."
Proteins: Structure, Function, and Bioinformatics, 63: 1112-1118 (2006). |
|
Johnson MA, Peti W, Herrmann T, Wilson IA, Wüthrich K.
"Solution structure of ASl1650, an acyl carrier protein from Anabaena sp. PCC 7120 with a variant
phosphopantetheinylation-site sequence."
Protein Sci., 15: 1030-1041 (2006).
PMID: 16597827 |
|
Kosloff M, Han GW, Krishna SS, Schwarzenbacher R, Fasnacht M, Elsliger MA, Abdubek P, Agarwalla S, Ambing E, Astakhova T,
Axelrod HL, Canaves JM, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L, Feuerhelm J, Grittini C, Grzechnik Sk, Hale J,
Hampton E, Haugen J, Jaroszewski L, Jin KK, Johnson H, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Levin I, McMullan D,
Miller MD, Morse AT, Moy K, Nigoghossian E, Okach L, Oommachen S, Page R, Paulsen J, Quijano K, Reyes R, Rife CL, Sims E,
Spraggon G, Sridhar V, Stevens RC, Van den Bedem H, Velasquez J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A,
Lesley SA, Wilson IA.
"Comparative structural analysis of a novel glutathioneS-transferase (ATU5508) from Agrobacterium tumefaciens at 2.0 Å resolution."
Proteins: Structure, Function, and Bioinformatics,65(3): 527-537 (2006). |
|
Mathews II, Krishna SS, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Canaves JM, Chiu HJ, Deacon AM, Didonato M, Elsliger MA,
Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Jaroszewski L, Klock HE, Koesema E, Kreusch A, Kuhn P,
Lesley SA, Levin I, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Spraggon G, Stevens RC, Van den Bedem H, Velasquez
J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of phosphoribosylformlglycinamidine synthase II (smPurL) from Thermotoga maritima at 2.15 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 63: 1106-1111 (2006). |
|
Mathews II, Krishna SS, Schwarzenbacher R, McMullan D, Jaroszewski L, Miller MD, Abdubek P, Agarwalla S, Ambing E, Axelrod HL,
Canaves JM, Carlton D, Chiu HJ, Clayton T, DiDonoato M, Duan L, Elsligher MA, Grzechnik SK, Hale J, Hampton E, Haugen J, Jin KK,
Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Levin I, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K,
Reyes R, Rife CL, Spraggon G, Stevens RC, Van den Bedem H, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A,
Lesley SA, Wilson IA.
"Crystal structure of phosphoribosylformyl-glycinamidine synthase II, PurS subunit (TM1244) from Thermotoga maritima at
1.90 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 65: 249-254 (2006). |
|
Schwarzenbacher R, McMullan D, Krishna SS, Xu Q, Miller MD, Canaves JM, Elsliger MA, Floyd R, Grzechnik SK, Jaroszewski L,
Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, McPillips TM, Morse AT, Quijano K, Spraggon G, Stevens RC, Van den Bedem H,
Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.
"Crystal structure of a glycerate kinase (TM1585) from Thermotoga maritima at 2.70 Å resolution reveals a new fold."
Proteins: Structure, Function, and Bioinformatics, 65: 243-248 (2006). |
|
Serrano P, Almeida MS, Johnson MA, Wüthrich K.
"NMR assignment of the protein nsp3a from SARS-CoV."
J Biomol NMR, 36 Suppl 1: 45 (2006).
PMID: 16799860 |
|
Xu Q, Krishna SS, McMullan D, Schwarzenbacher R, Miller MD, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod HL,
Canaves JM, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Hampton E, Han GW,
Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Morse AT, Nigoghossian E, Okach L, Oommachen S,
Paulsen J, Quijano K, Reyes R, Rife CL, Spraggon G, Stevens RC, Van den Bedem H, White A, Wolf G, Hodgson KO, Wooley J,
Deacon AM, godzik A, Lesley SA, Wilson IA.
"Crystal structure of an ORFan protein (TM1622) from Thermotoga maritima at 1.75 Å resolution reveals a fold similar to the
Ran-binding protein Mog1p."
Proteins: Structure, Function, and Bioinformatics, 65: 777-782 (2006). |
|
Xu Q, Schwarzenbacher R, Sri Krishna S, McMullan D, Agarwalla S, Quijano K, Abdubek P, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu H
J,
Elsliger MA, Grittini C, Grzechnik SK, Didonato M, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Knuth MW, Ko
esema E,
Kreusch A, Kuhn P, Miller MD, Moy K, Nigoghossian E, Paulsen J, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, W
hite A,
Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.
"Crystal structure of acireductone dioxygenase (ARD) from Mus musculus at 2.06 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 64: 808-813 (2006). |
|
Xu Q, Schwarzenbacher R, McMullan D, Abdubek P, Agarwalla S, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM, Didonato
M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Klcok HE, Koesema E,
Kreusch A, Kuhn P, Lesley SA, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G, Stevens RC, vanden B
edem H, Velasquez J, White A, Wolf G, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of virulence factor CJ0248 from Campylobacter jejuni at 2.25 Å resolution reveals a new fold."
Proteins: Structure, Function, and Bioinformatics, 62: 292-296 (2006). |
| 2005 |
|
Almeida MS, Herrmann T, Peti W, Wilson IA, Wüthrich K.
"NMR structure of the conserved hypothetical protein TM0487 from Thermotoga maritima: implications for 216 homologous
DUF59 proteins."Protein Science, 14: 2880-2886 (2005). |
|
Arndt JW, Schwarzenbacher R, Page R, Abdubek P, Ambing E, Biorac T, Canaves JM, Chiu HJ, Dai X, Deacon AM, Didonato M, Elsliger MA,
Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Klock HE, Koesema E, Kreusch A, Kuhn P, Jaroszewski
L,
Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Nigoghossian E, Ouyang J, Peti WS, Quijano K, Reyes R, Sims E,
Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, White A, Wolf G, Xu Q, Zagnitko O, Hodgson
KO,
Wooley J, Wilson IA.
"Crystal structure of an α/β serine hydrolase (YDR428C) from Saccharomyces cerevisiae at 1.85 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 58: 755-758 (2005).
PMID: 16199668 |
|
Chappie JS, Canaves JM, Han GW, Rife CL, Xu Q, Stevens RC.
"The structure of a eukaryotic nicotinic acid phosphoribosyltransferase reveals structural heterogeneity among type II PRTases."
Structure, 13: 1385-1396 (2005).
PMID: 16154095 |
|
Columbus L, Peti W, Etezady-Esfarjani T, Herrmann T, Wüthrich K.
"NMR Structure determination of the conserved hypothetica protein TM1816 from Thermotoga maritima."
Proteins: Structure, Function, and Bioinformatics, 60(3): 552-557 (2005). |
|
Han GW, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Dai X, Deacon AM, DiDonato M,
Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Koesema K, Kreusch A,
Kuhn P, Lesley SA, McPhillips TM, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Spraggon G, Stevens RC,
van den Bedem H, Velasquez J, Vincent J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of an Apo mRNA decapping enzyme (DcpS) from Mouse at 1.83 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 60: 797-802 (2005).
PMID: 16001405 |
|
Han GW, Schwarzenbacher R, Page R, Jaroszewski L, Abdubek P, Ambing E, Biorac T, Canaves JM, Chiu HJ, Dai X, Deacon AM, Didonato M,
Elsliger MA,
Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Haugen J, Hornsby M, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Levin I,
McMullan D,
McPhillips TM, Miller MD, Moorse A, Moy K, Nigoghossian E, Ouyang J, Paulsen J, Quijano K, Reyes R, Sims E, Spraggon G, Stevens RC,
Van den Bdem H, Velaszuez J, Vincent J, Von Delft F, Wan X, West B, White A, Wolf G, Xu Q, Zagnitko O, Hodgson KO, Wooley J and IA Wilso
n.
"Crystal structure of an alanine-glyoxylate aminotransferase from Anabaena sp. at 1.70 Å resolution reveals a noncovalently linked PLP
cofactor."
Proteins: Structure, Function, and Bioinformatics, 58: 971-975 (2005). |
|
Jaroszewski L, Schwarzenbacher R, McMullan D, Abdubek P, Agarwalla S, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM,
DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Klcok HE, Koesema E,
Kreusch A, Kuhn P, Lesley SA, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G, Stevens RC,
van den Bedem H, Velasquez J, Vincent J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of Hsp33 chaperone (TM1394) from Thermotoga maritima at 2.20 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 61(3): 669-673 (2005). |
|
Klock HE, Schwarzenbacher R, Xu Q, McMullan D, Abdubek P, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM, DiDonato M,
Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Koesema E, Kreusch A, K
uhn P, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Rife C, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasqu
ez J, Vincent J, White A, Wolf G, Hodgson KO, Wooley J, Lesley SA, Wilson IA.
"Crystal structure of a conserved hypothetical protein (gi:13879369) from Mouse at 1.90 Å resolution reveals a new fold."
Proteins: Structure, Function, and Bioinformatics, 61: 1132-1136 (2005). |
|
Levin I, Miller MD, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Biorac T, Cambell J, Canaves JM, Chiu HJ, Deacon AM,
DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Hauen J, Hornsby M, Jaroszewski L, Karlak C,
Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Morse A, Moy K, Nigoghossian E, Ouyang J, Page R, Quijano K, Reyes R, Robb A, Sims E,
Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Zagnitko O, Hodgson KO, Wooley J,
Wilson IA.
"Crystal structure of an indigoidine synthase A (IndA)-like protein (TM1464) from Thermotoga maritima at
1.90 Å resolution reveals a new fold."
Proteins: Structure, Function, and Bioinformatics, 59: 864-868 (2005). |
|
Mathews I, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM,
DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Horsnby M, Jaroszewski L,
Klock HE, Koesema E, Kresuch A, Kuhn P, Lesley SA, Levin I, Miller MD, Moy K, Nigoghossian E, Ouyang J, Paulsen J, Quijano K,
Reyes R, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA) from Thermotoga maritima at 2.0 Å
resolution reveals a new fold."
Proteins: Structure, Function, and Bioinformatics, 59: 869-874 (2005). |
|
Peti W, Herrmann T, Zagnitko O, Grzechnik SK, Wüthrich K.
"NMR structure of the conserved hypothetical protein TM0979 from Thermotoga maritima."
Proteins: Structure, Function, and Bioinformatics, 59: 387-390 (2005).
PMID: 15723348 |
|
Peti W, Johnson MA, Hermann T, Newman BW, Buchmeier MJ, Nelson M, Joseph J, Page R, STevens RC, Kuhn P, Wüthrich K.
"Structural genomics of the severe acute respiratory syndrome coronavirus: Nuclear magentic resonance structure of the protiens nsP7."
J. Virology, 79: 12905-12913 (2005).
PMID: 16188992 |
|
Rife C, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu H-J, Deacon AM, DiDonato M, Elslig
er M-A,
Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Koesema E, Kreusch A, K
uhn P,
Lesley SA, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasq
uez J,
Vincent J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, and Wilson IA.
"Crystal structure of a putative modulator of DNA gyrase (pmbA) from Thermotoga maritima at 1.95 Å resolution reveals a new fold."
Proteins: Structure, Function, and Bioinformatics, 61: 444-448 (2005). |
|
Rife C, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM, DiDonato M,
Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Koesema E,
Kreusch A, Kuhn P, Lesley SA, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Sims E, Spraggono G, Stevens RC,
Van den Bedem H, Velasquez J, Vincent J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of the global regulatory protein CsrA form Pseudomonas putida at 2.05 Å resolution reveals a new fold."
Proteins: Structure, Function, and Bioinformatics, 61: 449-453 (2005) |
|
Xu Q, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Biorac T, Canaves JM, Chiu HJ, Dai X, Deacon AM, Didonato M, Elsliger MA,
Godzik A, Grittini C, Grzechnik SK, Hampton E, Hornsby M, Jaroszewski L, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Levin I,
Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Reyes R, Robb A, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J,
Vincent J, von Delft F, Wang X, West B, White A, Wolf G, Zagnitko O, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of a formiminotetrahydrofolate cyclodeaminase (TM1560) from Thermotoga maritima at 2.80 Å resolution reveals
a new fold."
Proteins: Structure, Function, and Bioinformatics, 58: 976-981 (2005). |
| 2004 |
|
Almeida MS, Peti W, Wüthrich K.
"1H-, 13C- and 15N-NMR assignment of the conserved hypothetical protein TM0487 from Thermotoga maritima."
J Biomol NMR 29: 453-454 (2004).
PMID: 15213465 |
|
Bakolitsa C, Schwarzenbacher R, McMullan D, Brinen LS, Canaves JM, Dai X, Deacon AM, Elsliger MA, Eshagi S, Floyd R, Godzik A,
Grittini C, Grzechnik SK, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McPhillips TM,
Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Robb A, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J,
von Delft F, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of an orphan protein (TM0875) from Thermotoga maritima at 2.00 Å resolution reveals a new fold."
Proteins: Structure, Function, and Bioinformatics, 56: 607-610 (2004). |
|
Erlandsen H, Canaves JM, Elsliger MA, von Delft F, Brinen LS, Dai X, Deacon AM, Floyd R, Godzik A, Grittini C, Grzechnik SK, Jaroszewski L,
Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R,
Robb A, Rodrigues K, Schwarzenbacher R, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Hodgson
KO, Wooley J, Wilson IA.
"Crystal structure of a conserved HEPN domain protein (TM0613) from Thermotoga maritima at 1.75 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 54: 806-809 (2004). |
|
Etezady-Esfarjani T, Herrmann T, Peti W, Klock H, Lesley SA Wüthrich K.
"NMR structure determination of the hypothetical protein TM1290 from Thermotoga maritima using automated NOESY analysis."
J. Biomol NMR, 29: 403-406 (2004). |
|
Greenwald J, Vega ME, Allendorph GP, Fischer WH, Vale W, Choe S.
"A flexible activin explains the membrane-dependent cooperative assembly of TGF-β family receptors."
Mol Cell, 15: 485-489 (2004).
PMID: 15304227 |
|
Heine A, Canaves JM, Von Delft F, Brinen LS, Dai X, Deacon AM, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C,
Grzechnik SK, Guda C, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D,
McPhillips TM, Miller MA, Miller MD, Morse A, Moy K, Ouyang J, Page R, Robb A, Rodrigues K, Schwarzenbacher R, Selby TL,
Spraggon G, Stevens RC, Van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of O-acetylserine sulfhydrylase (TM0665) from Thermotoga maritima at 1.8 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 56: 387-391 (2004).
|
|
Jaroszewski L, Schwarzenbacher R, von Delft F, McMullan D, Brinen LS, Canaves JM, Dai X, Deacon AM, DiDonato M, Elsliger MA,
Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Levin I, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A,
Kuhn P, Lesley SA, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Reyes R, Rezezadeh F, Robb A, Sims E,
Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of a novel manganese containing cupin (TM1459) from Thermotoga maritima at 1.65 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 56: 611-614 (2004).
|
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Levin I, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Biorac T, Cambell J, Canaves JM, Chiu HJ, Dai X, Deacon AM, DiDonato M,
Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA,
McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Reyes R, Robb A, Sims E, Spraggon G, Stevens RC, van den Bedem H,
Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of a putative NADPH-dependent oxidoreductase (GI: 18204011) from mouse at 2.10 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 56: 629-633 (2004). |
|
Levin I, Schwarzenbacher R, Page R, Abdubek P, Ambing E, Biorac T, Brinen LS, Cambell J, Canaves JM, Chiu H-J, Dai X, Deacon AM,
DiDonato M, Elsliger M-A, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE, Koesema E,
Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Quijano K, Reyes R,
Rezezadeh F, Robb A, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G,
Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of a PIN (PilT N-terminus) domain (AF0591) from Archaeoglobus fulgidus at 1.90 Å resolution."
Proteins: Structure, Function, and Genetics, 56: 404-408 (2004). |
|
McMullan D, Schwarzenbacher R, Jaroszewski L, von Delft F, Klock HE, Vincent J, Quijano K, Abdubek P, Ambing E, Biorac T, Brinen LS,
Canaves JM, Dai X, Deacon AM, DiDonato M, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Karlak C,
Koesema E, Kreusch A, Kuhn P, Levin I, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Reyes R, Rezezadeh F, Robb A, Sims E,
Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Lesley SA, Wilson IA.
"Crystal structure of a novel Thermotoga maritima enzyme (TM1112) from the cupin family at 1.83 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 56: 615-618 (2004).
|
|
Miller MD, Schwarzenbacher R, von Delft F, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu HJ, Dai X, Deacon AM,
DiDonato M, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE, Koesema E,
Kovarik JS, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Morse A, Moy K, Ouyang J, Page R, Quijano K, Robb A,
Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of a tandem cystathionine-β-synthase (CBS) domain protein (TM0935) from Thermotoga maritima
at 1.87 Å resolution."
Proteins: Structure, Function, and Genetics, 57: 213-217 (2004).
|
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Page R, Nelson M, Canaves JM, Elsliger MA, von Delft F, Brinen LS, Dai X, Deacon AM, Floyd R, Godzik A, Grittini C, Grzechnik SK,
Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K,
Ouyang J, Robb A, Rodrigues K, Schwarzenbacher R, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B,
Wolf G, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of γ-glutamyl phosphate reductase (TM0293) from Thermotoga maritima at 2.0 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 54: 157-161 (2004). |
|
Santelli E, Schwarzenbacher R, McMullan D, Biorac T, Brinen LS, Canaves JM, Cambell J, Dai X, Deacon AM, Elsliger M-A, Eshagi S,
Floyd R, Godzik A, Grittini C, Grzechnik SK, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P,
Lesley SA, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Robb A, Rezezadeh F, Robb A, Sims E, Spraggon G,
Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of a glycerophosphodiester phosphodiesterase (GDPD) from Thermotoga maritima (TM1621) at 1.60 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 56: 167-170 (2004). |
|
Schwarzenbacher R, Deacon AM, Jaroszewski L, Brinen LS, Canaves JM, Dai X, Elsliger M-A, Floyd R, Godzik A, Grittini C, Grzechnik SK, Kl
ock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Nelson MS, Ouyang J,
Page R, Robb A, Rodrigues K, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Hodgs
on KO, Wooley J, Wilson IA.
"Crystal structure of a putative glutamine amido transferase (TM1158) from Thermotoga maritima at 1.7 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 54: 801-805 (2004). |
|
Schwarzenbacher R, Jaroszewski L, von Delft F, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu H-J, Dai X, Deacon
AM, DiDonato M, Elsliger M-A, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Karlak C, Klock HE, Koesema E, Kovarik J
S, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Robb A, Rodrigues K, S
praggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of an aspartate aminotransferase (TM1255) from Thermotoga maritima at 1.90 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 55: 759-763 (2004). |
|
Schwarzenbacher R, Jaroszewski L, Delft Fv, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu H-J, Dai X, Deacon AM,
DiDonato M, Elsliger M-A, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Karlak C, Klock HE, Koesema E, Kovarik JS,
Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Robb A, Rodrigues K, Spra
ggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of a phosphoribosylaminoi midazole mutase PurE (TM0446) from Thermotoga maritima at 1.77 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 55: 474-478 (2004). |
|
Schwarzenbacher R, Jaroszewski L, von Delft F, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu H-J, Dai X, Deacon
AM, DiDonato M, Elsliger M-A, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Karlak C, Klock HE, Koesema E, Kovarik J
S, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Robb A, Rodrigues K, S
praggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of a type II quinolic acid phosphoribosyltransferase (TM1645) from Thermotoga maritima at 2.50 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 55: 768-771 (2004). |
|
Schwarzenbacher R, von Delft F, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu H-J, Dai X, Deacon AM,
DiDonato M, Elsliger M-A, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE,
Koesema E, Kovarik J S, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R,
Robb A, Rodrigues K, S praggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Hodgson KO,
Wooley J, Wilson IA.
"Crystal structure of a putative PII-like signaling protein (TM0021) from Thermotoga maritima at 2.5 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 54: 810-813 (2004). |
|
Schwarzenbacher R, Delft Fv, Canaves JM, Brinen LS, Dai X, Deacon AM, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik S
K, Guda C, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MA,
Miller MD, Morse A, Moy K, Ouyang J, Page R, Robb A, Rodrigues K, Selby TL, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vince
nt J, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of an iron-containing 1,3-propanediol dehydrogenase (TM0920) from Thermotoga maritima at 1.3 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 54: 174-177 (2004). |
|
Schwarzenbacher R, Von Delft F, Jaroszewski L, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu H-J, Dai X,
Deacon AM, DiDonato M, Elsliger M-A, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Karlak C, Klock HE,
Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J,
Page R, Robb A, Rodrigues K, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q,
Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of a putative oxalate decarboxylase (TM1287) from Thermotoga maritima at 1.95 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 56: 392-395 (2004).
|
|
Spraggon G, Schwarzenbacher R, Kreusch A, Lee CC, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu H-J, Dai X, Deac
on AM, DiDonato M, Elsliger M-A, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C,
Klock HE, Koesema E, Kovarik JS, Kuhn P, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Robb A,
Rodrigues K, Stevens RC, Van Bedem H, Velasquez J, Vincent J, Von Delft F, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J,
Lesley SA, Wilson IA.
"Crystal structure of an Udp-n-acetylmuramate-alanine ligase MurC (TM0231) from Thermotoga maritima at 2.3 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 55: 1078-1081 (2004). |
|
Spraggon G, Schwarzenbacher R, Kreusch A, McMullan D, Brinen LS, Canaves JM, Dai X, Deacon AM, Elsliger M-A, Eshagi S, Floyd R,
Godzik A, Grittini C, Grzechnik SK, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kuhn P, McPhillips TM, Miller MD,
Morse A, Moy K, Ouyang J, Quijano K, Page R, Rezezadeh F, Robb A, Sims E, Stevens RC, van den Bedem H, Velasquez J, Vincent J,
Von Delft F, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Lesley SA, Wilson IA.
"Crystal structure of a methionine aminopeptidase (TM1478) from Thermotoga maritima at 1.9 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 56: 396-400 (2004).
|
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Xu Q, Schwarzenbacher R, McMullan D, von Delft F, Brinen LS, Canaves JM, Dai X, Deacon AM, DiDonato M, Elsliger M-A, Eshagi S,
Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A,
Kuhn P, Lesley SA, Levin I, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Robb A, Rodrigues K, Spraggon G,
Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of a ribose-5-phosphate isomerase RpiB (TM1080) from Thermotoga maritima at 1.90 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 56: 171-175 (2004).
|
|
Xu Q, Schwarzenbacher R, Page R, Abdubek P, Ambing E, Biorac T, Brinen LS, Cambell J, Canaves JM, Chiu H-J, Dai X,
Deacon AM, DiDonato M, Elsliger M-A, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE,
Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J,
Quijano K, Reyes R, Rezezadeh F, Robb A, Sims E, Spraggon G, Stevens RC, Van Bedem H, Velasquez J, Vincent J, Von Delft F,
Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of an Allantoicase (YIR029W) from saccharomyces cerevisiae at 2.4 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 56: 619-624 (2004).
|
| 2003 |
|
Brinen LS, Canaves JM, Dai X, Deacon AM, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Guda C, Jaroszewski L, Kar
lak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Mark A. M, Miller MD, Morse A, Moy K, O
uyang J, Robb A, Rodrigues K, Selby TL, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Taylor
SS, Hodgson KO, Wooley J, Wilson IA.
"Crystal Structure of a Zinc-Containing Glycerol Dehydrogenase (TM0423) from Thermotoga maritima at 1.5 Å Resolution."
Proteins: Structure, Function, and Genetics, 50: 371-374 (2003). |
|
Etezady-Esfarjani T, Peti W, Wüthrich K.
"NMR assignment of the conserved hypothetical protein TM1290 of Thermotoga maritima."
J Biomol NMR, 25: 167-8 (2003).
PMID: 12652129 |
|
Schwarzenbacher R, Canaves JM, Brinen LS, Dai X, Deacon AM, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Guda C, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MA, Miller MD, Morse A, Moy K, Ouyang J, Robb A, Rodrigues K, Selby TL, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA.
"Crystal structure of a uronate isomerase (TM0064) from Thermotoga maritima at 2.85 Å resolution."
Proteins: Structure, Function, and Bioinformatics, 53: 142-145 (2003).
|
| 2002 |
|
Kuhn P, Lesley SA, Mathews II, Canaves JM, Brinen LS, Dai X, Deacon AM, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik
SK, Guda C, Hodgson KO, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JM, Kreusch AT, McMullan D, McPhillips TM, Miller MA, Mil
ler M, Morse A, Moy K, Ouyang J, Robb A, Rodrigues K, Selby TL, Spraggon G, Stevens RC, Taylor SS, van den Bedem H, Velasquez J, Vincent
J, Wang X, West B, Wolf G, Wooley J, Wilson IA.
"Crystal Structure of Thy1, a Thymidylate Synthase Complementing Protein From Thermotoga maritima at 2.25 Å Resolution."
Proteins: Structure, Function, and Genetics, 49: 142-145 (2002).
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Publications using technology or methodology developed by the JCSG
|
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Arndt JW, Gu J, Jaroszewski L, Schwarzenbacher R, Hanson MA, Lebeda FJ, Stevens RC.
"The structure of the neurotoxin-associated protein HA33/A from Clostridium botulinum suggests a reoccurring β-trefoil fold in the progenitor toxin complex."
J Mol Biol., 346: 1083-1093 (2005)
PMID: 15701519
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Bossy-Wetzel E, Barsoum MJ, Godzik A, Schwarzenbacher R, Lipton SA.
"Mitochondrial fission in apoptosis, neurodegeneration and aging."
Curr Opin Cell Biol., 15: 706-716 (2003). |
|
Gymnopoulos M, Elsliger MA, Vogt PK.
"Rare cancer-specific mutations in PIK3CA show gain of function."
Proc Natl Acad Sci USA, 103: 5569-5574 (2007).
PMID: 17376864
|
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Huang S, Romanchuk G, Pattridge K, Lesley SA, Wilson IA, Mathews RG, Ludwig M.
"Reactivation of methionine synthase from Thermotoga maritima (TM0268) requires the downstream gene product TM0269."
Protein Science, 16: 1588-1595 (2007).
PMID: 17656578 |
|
Stevens J, Corper AL, Basler CF, Taubenberger JK, Palese P, Wilson IA.
"Structure of the uncleaved human H1 hemagglutinin from the extinct 1918 influenza virus."
Science., 303: 1866-1870 (2004).
PMID: 14764887
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Vogt PK, Kang S, Elsliger MA.
"Gymnopoulos M. Cancer-specific mutations in phosphatidylinositol 3-kinase."
Trends Biochem Sci., 32: 342-349 (2007).
PMID: 17561399 |
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