Family Coverage by Structural Genomics Centers
The graphs below present a preliminary version of these data and we are now reconciling it with the numbers provided by the PSI KnowledgeDatabase
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Remarks:
- Coverage is shown for families assigned to PSI Large-Scale Centers.
- Bars on the graphs show counts of solved families assigned to PSI Large-Scale Centers
- Colored regions inside bars correspond to counts of families solved by the center itself, other large-scale center, PSI specialized centers and non-PSI SG centers reporting to TargetDB
- Hits to Pfam families were determined using Pfam 23.0 HMM models
- HMM models for Draft-2 families are temporary and may change.
- Hits were determined using hmmpfam v 2.3.2 with e-value cutoff at 0.05
- Assignment of Families
First Structures from Protein Families - Families Assigned in Drafts 1-4 |
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Coverage of Families Assigned in Draft-1 (Pfam Families) |
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Coverage of Families Assigned in Draft-2 (New Families) |
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Coverage of Familes Assigned in Draft-3 |
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Coverage of Familes Assigned in Draft-4 |
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Coverage of Mega-Familes Assigned in Draft-5 |
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Coverage of Modeling Families of P-Loop NTP-ases Assigned in Draft-6 |
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Coverage of families from Human Gut Microbiome Assigned in Draft-7 |
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Coverage of Small Mega-Families Assigned in Draft-8 |
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Coverage of Medium Mega-Families Assigned in Draft-9 |
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Coverage of Super Mega-Families Assigned in Draft-10 |
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Coverage of Modeling Families from MEGA Families in Draft-11 |
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Coverage of Families from Human Gut Microbiome in Draft-12 |
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Coverage of Modeling Families from MEGA Families in Draft-13 |
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