In case of co-crystallized proteins each member of the complex is listed separately
|
History |
TOPSAN |
PDB ID |
Method |
|
Deposition Date |
Accession Number |
|
 |
|
 |
Target ID |
|
Target Name |
|
Local Accession |
|
Description |
click picture for more info |
| 1 |
 |
 |
3dxo |
X-RAY |
|
2008/07/24 |
17739112 |
|
N/A |
|
 |
390424 |
|
MG14441A |
|
MG14441A |
|
gi|17739112|gb|AAL41760.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008688|:742330-742692, Atu0744 |
 |
| 2 |
 |
 |
3dxp |
X-RAY |
|
2008/07/24 |
YP_295230.1 |
|
N/A |
|
 |
387040 |
|
EK5976M |
|
EK5976M |
|
Putative acyl-CoA dehydrogenase from fatty acid metabolism. |
 |
| 3 |
 |
 |
3dxq |
X-RAY |
|
2008/07/24 |
NP_106042.1 |
|
N/A |
|
 |
386994 |
|
EK14125A |
|
EK14125A |
|
Putative choline/ethanolamine/thiamine kinase. |
 |
| 4 |
 |
 |
3dv8 |
X-RAY |
|
2008/07/18 |
RER070207001219 |
|
N/A |
|
 |
388639 |
|
GD10876A |
|
GD10876A |
|
Transcriptional regulator, Crp/Fnr family. |
 |
| 5 |
 |
 |
3duk |
X-RAY |
|
2008/07/17 |
YP_544675.1 |
|
N/A |
|
 |
378221 |
|
FM11862B |
|
FM11862B |
|
NTF2-like protein of unknown function. |
 |
| 6 |
 |
 |
3due |
X-RAY |
|
2008/07/17 |
YP_001300247.1 |
|
N/A |
|
 |
390185 |
|
GS13115A |
|
GS13115A |
|
GS13115A |
 |
| 7 |
 |
 |
3dtt |
X-RAY |
|
2008/07/15 |
YP_830112.1 |
|
N/A |
|
 |
377840 |
|
FM11555A |
|
FM11555A |
|
Putative coenzyme F420H2:NADP+ oxidoreductase. |
 |
| 8 |
|
 |
3do6 |
X-RAY |
|
2008/07/03 |
TM1766 |
|
CASP Target |
|
CASP Target |
283620 |
|
TM1766 |
|
TM1766 |
|
CASP Target |
 |
| 9 |
|
 |
3do5 |
X-RAY |
|
2008/07/03 |
NP_069768.1 |
|
CASP Target |
|
CASP Target |
378947 |
|
FN0547B |
|
FN0547B |
|
CASP Target |
 |
| 10 |
|
 |
3dmc |
X-RAY |
|
2008/06/30 |
YP_322774.1 |
|
CASP Target |
|
CASP Target |
367507 |
|
NB7795A |
|
NB7795A |
|
CASP Target |
 |
| 11 |
|
 |
3dmb |
X-RAY |
|
2008/06/30 |
NP_637619.1 |
|
CASP Target |
|
CASP Target |
380344 |
|
FG7482A |
|
FG7482A |
|
CASP Target |
 |
| 12 |
|
 |
3dlc |
X-RAY |
|
2008/06/26 |
NP_988299.1 |
|
CASP Target |
|
CASP Target |
387106 |
|
FN0318R |
|
FN0318R |
|
CASP Target |
 |
| 13 |
|
 |
3dl1 |
X-RAY |
|
2008/06/26 |
YP_001336084.1 |
|
CASP Target |
|
CASP Target |
388889 |
|
PK5307B |
|
PK5307B |
|
CASP Target |
 |
| 14 |
 |
 |
3dkq |
X-RAY |
|
2008/06/25 |
YP_001051978.1 |
|
N/A |
|
 |
383464 |
|
FP4102A |
|
FP4102A |
|
sbal_17sep04_Contig236_revised_gene2668 |
 |
| 15 |
|
 |
3dka |
X-RAY |
|
2008/06/24 |
NP_389123.1 |
|
CASP Target |
|
CASP Target |
389728 |
|
PK14417A |
|
PK14417A |
|
CASP Target |
 |
| 16 |
 |
 |
3djm |
X-RAY |
|
2008/06/23 |
YP_001042567.1 |
|
N/A |
|
 |
376596 |
|
PS04248 |
|
PS04248 |
|
Protein of unknown function (DUF427/Pfam04248/COG2343) with structural similarity to tandem methionine sulfoxide reductase domains of the pilB protein (PDB code 1L1D) and to the C-terminal regulatory domain of human RIG-I (PDB code 2QFD). |
 |
| 17 |
 |
 |
3di4 |
X-RAY |
|
2008/06/19 |
YP_165628.1 |
|
N/A |
|
 |
383110 |
|
FP10366A |
|
FP10366A |
|
Protein of unknown function (DUF1989/COG3665) with complex topology and detectable structural similarity to concanavalin A-like lectins/glucanases. |
 |
| 18 |
|
 |
3di5 |
X-RAY |
|
2008/06/19 |
NP_980948.1 |
|
CASP Target |
|
CASP Target |
374604 |
|
PJ05163D |
|
PJ05163D |
|
CASP Target |
 |
| 19 |
 |
 |
3dfu |
X-RAY |
|
2008/06/12 |
NP_601885.1 |
|
 |
|
 |
377822 |
|
FM11540A |
|
FM11540A |
|
gi|19553883|ref|NP_601885.1| hypothetical protein NCgl2596 [Corynebacterium glutamicum ATCC 13032] |
 |
| 20 |
|
 |
3dfe |
X-RAY |
|
2008/06/11 |
YP_323533.1 |
|
CASP Target |
|
CASP Target |
378258 |
|
FM11897A |
|
FM11897A |
|
CASP Target |
 |
| 21 |
|
 |
3dee |
X-RAY |
|
2008/06/09 |
YP_208969.1 |
|
CASP Target |
|
CASP Target |
389948 |
|
FP12834A |
|
FP12834A |
|
CASP Target |
 |
| 22 |
 |
 |
3ddj |
X-RAY |
|
2008/06/05 |
NP_344512.1 |
|
N/A |
|
 |
380014 |
|
FN0829A |
|
FN0829A |
|
CBS domain-containing protein in complex with AMP. |
 |
| 23 |
 |
 |
3dde |
X-RAY |
|
2008/06/05 |
YP_564736.1 |
|
N/A |
|
 |
370140 |
|
FJ9110A |
|
FJ9110A |
|
|
 |
| 24 |
 |
 |
3ddd |
X-RAY |
|
2008/06/05 |
NP_142035.1 |
|
N/A |
|
 |
379751 |
|
FN12657A |
|
FN12657A |
|
gi|14589974|ref|NP_142035.1| hypothetical protein [Pyrococcus horikoshii] |
 |
| 25 |
|
 |
3dcx |
X-RAY |
|
2008/06/04 |
YP_001092950.1 |
|
CASP Target |
|
CASP Target |
380289 |
|
PC08000B |
|
PC08000B |
|
CASP Target |
 |
| 26 |
 |
 |
3dcz |
X-RAY |
|
2008/06/04 |
TM0246 |
|
N/A |
|
 |
358404 |
|
TM0246 |
|
TM0246 |
|
Putative RnfG subunit of electron transport complex. |
 |
| 27 |
 |
 |
3dcf |
X-RAY |
|
2008/06/03 |
TFUS_04MAR05_CONTIG93_REVISED_GENE761 |
|
N/A |
|
 |
390257 |
|
FP2858A |
|
FP2858A |
|
Putative transcriptional regulator of the TetR/AcrR family is similar to C-terminal region (inducing compounds-binding) of QacR. |
 |
| 28 |
 |
 |
3db7 |
X-RAY |
|
2008/05/30 |
NP_809836.1 |
|
N/A |
|
 |
389981 |
|
GS14096A |
|
GS14096A |
|
The putative calcium-regulated periplasmic protein of unknown function (BT0923) may be functionally associated with its genomic neighbors: BT0922 (putative lipoprotein) and BT0924 (predicted membrane protein). |
 |
| 29 |
|
 |
3db0 |
X-RAY |
|
2008/05/30 |
NP_472219.1 |
|
CASP Target |
|
CASP Target |
380201 |
|
FH7686A |
|
FH7686A |
|
CASP Target |
 |
| 30 |
 |
 |
3db2 |
X-RAY |
|
2008/05/30 |
DHAF_12NOV03_CONTIG1044_REVISED_GENE999 |
|
N/A |
|
 |
379259 |
|
FN12543A |
|
FN12543A |
|
Putative NADPH-dependent oxidoreductase. |
 |
| 31 |
|
 |
3dao |
X-RAY |
|
2008/05/29 |
RER070207001050 |
|
CASP Target |
|
CASP Target |
388491 |
|
GD4050C |
|
GD4050C |
|
CASP Target |
 |
| 32 |
 |
 |
3d9r |
X-RAY |
|
2008/05/27 |
YP_049581.1 |
|
N/A |
|
 |
378184 |
|
FM11835A |
|
FM11835A |
|
Ketosteroid isomerase-like protein with an unknown ligand. The ligand is bound in a deep aromatic cleft containing conserved Tyr19, Glu110, and Tyr127. |
 |
| 33 |
|
 |
3d8p |
X-RAY |
|
2008/05/23 |
NP_373092.1 |
|
CASP Target |
|
CASP Target |
379875 |
|
FN9546A |
|
FN9546A |
|
CASP Target |
 |
| 34 |
 |
 |
3d82 |
X-RAY |
|
2008/05/22 |
YP_752209.1 |
|
N/A |
|
 |
387127 |
|
FK6177B |
|
FK6177B |
|
FK6177B |
 |
| 35 |
 |
 |
3d7i |
X-RAY |
|
2008/05/21 |
1591455 |
|
N/A |
|
 |
381877 |
|
1591455 |
|
XB5681A |
|
Carboxymuconolactone decarboxylase family protein possibly involved in oxygen detoxification. |
 |
| 36 |
 |
 |
3d7q |
X-RAY |
|
2008/05/21 |
NPUN_22DEC03_PLASMIDA_REVISED_GENEPNPAR114 |
|
N/A |
|
 |
368193 |
|
PE00035E |
|
PE00035E |
|
XisI protein-like. |
 |
| 37 |
 |
 |
3d5p |
X-RAY |
|
2008/05/16 |
YP_211376.1 |
|
N/A |
|
 |
388451 |
|
GD10527A |
|
GD10527A |
|
Putative glucan synthesis regulator of Smi1/Knr4 family. |
 |
| 38 |
 |
 |
3d4e |
X-RAY |
|
2008/05/14 |
NP_721579.1 |
|
N/A |
|
 |
390321 |
|
GS13262A |
|
GS13262A |
|
Putative beta-lactamase inhibitor protein. |
 |
| 39 |
 |
 |
3d4r |
X-RAY |
|
2008/05/14 |
NP_987166.1 |
|
N/A |
|
 |
381816 |
|
FM11771A |
|
FM11771A |
|
FM11771A |
 |
| 40 |
 |
 |
3d4o |
X-RAY |
|
2008/05/14 |
NP_243269.1 |
|
N/A |
|
 |
379058 |
|
FN12445A |
|
FN12445A |
|
gi|15614966|ref|NP_243269.1| dipicolinate synthase subunit A [Bacillus halodurans] |
 |
| 41 |
 |
 |
3d33 |
X-RAY |
|
2008/05/09 |
YP_001297618.1 |
|
N/A |
|
 |
390198 |
|
GS13144A |
|
GS13144A |
|
GS13144A |
 |
| 42 |
 |
 |
3d2l |
X-RAY |
|
2008/05/08 |
YP_001813268.1 |
|
N/A |
|
 |
383355 |
|
FP0938B |
|
FP0938B |
|
SAM-dependent methyltransferase. |
 |
| 43 |
 |
 |
3d1u |
X-RAY |
|
2008/05/06 |
TFUS_04MAR05_CONTIG93_REVISED_GENE318 |
|
N/A |
|
 |
387095 |
|
EK2269L |
|
EK2269L |
|
tfus_04mar05_Contig93_revised_gene318 |
 |
| 44 |
 |
 |
3d1c |
X-RAY |
|
2008/05/05 |
NP_373108.1 |
|
N/A |
|
 |
382610 |
|
FP10572B |
|
FP10572B |
|
gi|15925574|ref|NP_373108.1| probable monooxygenase [Staphylococcus aureus subsp. aureus Mu50] |
 |
| 45 |
 |
 |
3d00 |
X-RAY |
|
2008/04/30 |
YP_460196.1 |
|
N/A |
|
 |
383639 |
|
FP7651A |
|
FP7651A |
|
Tungsten formylmethanofuran dehydrogenase subunit E (FwdE). |
 |
| 46 |
 |
 |
3d02 |
X-RAY |
|
2008/04/30 |
YP_001338366.1 |
|
N/A |
|
 |
390056 |
|
GS13859A |
|
GS13859A |
|
Periplasmic sugar-binding protein. |
 |
| 47 |
 |
 |
3cwr |
X-RAY |
|
2008/04/22 |
YP_425770.1 |
|
N/A |
|
 |
379808 |
|
FN9673I |
|
FN9673I |
|
Transcriptional regulator of TetR family (YP_425770) and proteins with putative antimicrobial activity are encoded by neighboring genes. |
 |
| 48 |
 |
 |
3cvj |
X-RAY |
|
2008/04/18 |
NP_244191.1 |
|
N/A |
|
 |
379051 |
|
FN8771A |
|
FN8771A |
|
Putative phosphoheptose isomerase from fructose and mannose metabolism is a member of COG4821. |
 |
| 49 |
 |
 |
3cvo |
X-RAY |
|
2008/04/18 |
YP_167254.1 |
|
N/A |
|
 |
377915 |
|
FM11616A |
|
FM11616A |
|
Methyltransferase-like protein (YP_167254) of unknown function is encoded in the genomic neighborhood of SufB, SufC, SufD, and SufS (proteins involved in iron-sulfur cluster assembly). Glycine-rich loop of YP_167254 has different conformation than any known S-adenosylmethionine-binding loop found in SAM-dependent methyltransferases. |
 |
| 50 |
 |
 |
3cuc |
X-RAY |
|
2008/04/16 |
NP_811426.1 |
|
N/A |
|
 |
371850 |
|
NP_811426.1 |
|
CL5922A |
|
|
 |
| 51 |
 |
 |
3cu2 |
X-RAY |
|
2008/04/15 |
YP_718263.1 |
|
N/A |
|
 |
377798 |
|
FM11521A |
|
FM11521A |
|
Ribulose-5-phosphate 3-epimerase (Pfam: PF00834, NCBI: cd00429) |
 |
| 52 |
 |
 |
3cu3 |
X-RAY |
|
2008/04/15 |
NPUN_22DEC03_CONTIG1_REVISED_GENENPR1993 |
|
N/A |
|
 |
377910 |
|
FM11613A |
|
FM11613A |
|
npun_22dec03_Contig1_revised_geneNpR1993 |
 |
| 53 |
 |
 |
3ct8 |
X-RAY |
|
2008/04/11 |
NP_243026.1 |
|
N/A |
|
 |
367517 |
|
NB7805A |
|
NB7805A |
|
|
 |
| 54 |
 |
 |
3ct9 |
X-RAY |
|
2008/04/11 |
NP_812461.1 |
|
N/A |
|
 |
375081 |
|
HP10625B |
|
HP10625B |
|
gi|29348958|ref|NP_812461.1| acetylornithine deacetylase [Bacteroides thetaiotaomicron VPI-5482] |
 |
| 55 |
 |
 |
3csv |
X-RAY |
|
2008/04/10 |
YP_614837.1 |
|
N/A |
|
 |
387075 |
|
EK8604E |
|
EK8604E |
|
gi|99082683|ref|YP_614837.1| aminoglycoside phosphotransferase [Silicibacter sp. TM1040] |
 |
| 56 |
 |
 |
3csw |
X-RAY |
|
2008/04/10 |
TM0831 |
|
N/A |
|
 |
282701 |
|
TM0831 |
|
TM0831 |
|
Probable branched-chain amino acid aminotransferase (EC 2.6.1.42)
(BCAT). |
 |
| 57 |
 |
 |
3cpx |
X-RAY |
|
2008/04/01 |
YP_676701.1 |
|
N/A |
|
 |
375102 |
|
HP10638A |
|
HP10638A |
|
chut_08nov04_Contig199_revised_gene62 |
 |
| 58 |
 |
 |
3cnx |
X-RAY |
|
2008/03/26 |
NP_825848.1 |
|
N/A |
|
 |
378018 |
|
FM11705A |
|
FM11705A |
|
NTF2-like protein of unknown function. |
 |
| 59 |
 |
 |
3cny |
X-RAY |
|
2008/03/26 |
NP_786806.1 |
|
N/A |
|
 |
383008 |
|
FP6320A |
|
FP6320A |
|
gi|28379914|ref|NP_786806.1| inositol catabolism protein IolE [Lactobacillus plantarum WCFS1] |
 |
| 60 |
 |
 |
3cnh |
X-RAY |
|
2008/03/25 |
NP_295428.1 |
|
N/A |
|
 |
379311 |
|
FN12557A |
|
FN12557A |
|
Predicted hydrolase of haloacid dehalogenase-like superfamily. |
 |
| 61 |
 |
 |
3cmb |
X-RAY |
|
2008/03/21 |
YP_001047042.1 |
|
N/A |
|
 |
378367 |
|
PT06314A |
|
PT06314A |
|
PT06314A _0000.0702158_ gi|126179077|ref|YP_001047042.1| hypothetical protein Memar_1128 [Methanoculleus marisnigri JR1] |
 |
| 62 |
 |
 |
3cm1 |
X-RAY |
|
2008/03/20 |
YP_290167.1 |
|
N/A |
|
 |
361176 |
|
PC04686E |
|
PC04686E |
|
YP_290167 belongs to SsgA-like sporulation-specific cell division proteins, where SsgA and SsgB are essential for sporulation-specific cell division in S. coelicolor, SsgC-G are responsible for correct DNA segregation/condensation (SsgC), spore wall synthesis (SsgD), autolytic spore separation (SsgE, SsgF), or exact septum localisation (SsgG) [Noens et al. (2005) Mol Microbiol 58: 929-944] |
 |
| 63 |
 |
 |
3clo |
X-RAY |
|
2008/03/19 |
NP_811094.1 |
|
N/A |
|
 |
383272 |
|
FP13075B |
|
FP13075B |
|
gi|29347591|ref|NP_811094.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] |
 |
| 64 |
 |
 |
3clm |
X-RAY |
|
2008/03/19 |
YP_208650.1 |
|
N/A |
|
 |
379639 |
|
FN12523B |
|
FN12523B |
|
The protein structure of transaldolase (YP_208650.1) is almost identical to transaldolase B from Escherichia coli (PDB code 1onr). |
 |
| 65 |
 |
 |
3cjx |
X-RAY |
|
2008/03/14 |
YP_298765.1 |
|
N/A |
|
 |
380353 |
|
FG7408A |
|
FG7408A |
|
Protein with a cupin-like fold and unknown function. |
 |
| 66 |
 |
 |
3cjy |
X-RAY |
|
2008/03/14 |
YP_496845.1 |
|
N/A |
|
 |
371292 |
|
FK9613A |
|
FK9613A |
|
|
 |
| 67 |
 |
 |
3ck1 |
X-RAY |
|
2008/03/14 |
YP_296387.1 |
|
N/A |
|
 |
379793 |
|
FN7456B |
|
FN7456B |
|
The putative thioesterase (EC 3.1.2.-) may be involved in benzoate degradation via CoA ligation or in limonene and pinene degradation. It is similar to protein structures with PDB codes: 2oaf, 1s5u, 2egi, 2av9, and 1z54. |
 |
| 68 |
 |
 |