In case of co-crystallized proteins each member of the complex is listed separately
|
History |
TOPSAN |
PDB ID |
Method |
|
Deposition Date |
Accession Number |
|
 |
|
 |
Target ID |
|
Target Name |
|
Local Accession |
|
Description |
click picture for more info |
| 1 |
 |
 |
2fup |
X-RAY |
|
2006/01/27 |
NP_252042.1 |
|
N/A |
|
 |
369551 |
|
NP_252042.1 |
|
CL6182A |
|
|
 |
| 2 |
 |
 |
2peb |
X-RAY |
|
2007/04/02 |
NPUN_22DEC03_CONTIG1_REVISED_GENENPF1925 |
|
N/A |
|
 |
374007 |
|
PE00092D |
|
PE00092D |
|
PE00092D |
 |
| 3 |
 |
 |
3egr |
X-RAY |
|
2008/09/11 |
YP_297411.1 |
|
N/A |
|
 |
389767 |
|
PK6406E |
|
PK6406E |
|
Phenylacetate-CoA oxygenase subunit PaaB |
 |
| 4 |
 |
 |
3f6t |
X-RAY |
|
2008/11/06 |
YP_194538.1 |
|
N/A |
|
 |
391714 |
|
MG11333F |
|
MG11333F |
|
Aspartate aminotransferase (E.C. 2.6.1.1). It is in the conserved genomic neighborhood of aspartate alanine antiporter. |
 |
| 5 |
 |
 |
3d1c |
X-RAY |
|
2008/05/05 |
NP_373108.1 |
|
N/A |
|
 |
382610 |
|
FP10572B |
|
FP10572B |
|
gi|15925574|ref|NP_373108.1| probable monooxygenase [Staphylococcus aureus subsp. aureus Mu50] |
 |
| 6 |
 |
 |
3b5p |
X-RAY |
|
2007/10/26 |
NPUN_22DEC03_CONTIG1_REVISED_GENENPF6505 |
|
N/A |
|
 |
377778 |
|
FM11503A |
|
FM11503A |
|
CADD-like protein of unknown function. The function of ZP_00108531 could be similar to that of CT610 protein from Chlamydia trachomatis. |
 |
| 7 |
 |
 |
2hbw |
X-RAY |
|
2006/06/14 |
YP_323898.1 |
|
N/A |
|
 |
360689 |
|
PC00877A |
|
PC00877A |
|
|
 |
| 8 |
 |
 |
1o0y |
X-RAY |
|
2002/09/13 |
TM1559 |
|
N/A |
|
N/A |
283416 |
|
TM1559 |
|
TM1559 |
|
Deoxyribose-phosphate aldolase (EC 4.1.2.4) (Phosphodeoxyriboaldolase)
(Deoxyriboaldolase) (DERA). |
 |
| 9 |
 |
 |
2ka0 |
NMR |
|
2008/10/27 |
TM1367 |
|
N/A |
|
N/A |
283228 |
|
TM1367 |
|
TM1367 |
|
Hypothetical protein TM1367. |
 |
| 10 |
 |
 |
2hsz |
X-RAY |
|
2006/07/24 |
YP_718383.1 |
|
N/A |
|
 |
366906 |
|
FG7325A |
|
FG7325A |
|
|
 |
| 11 |
 |
 |
2k87 |
NMR |
|
2008/09/02 |
NP_828850.1 |
|
N/A |
|
N/A |
396981 |
|
SARS168 |
|
SARS168 |
|
gi|29836495|ref|NP_828850.1| orf1a polyprotein (pp1a) [SARS coronavirus] |
 |
| 12 |
 |
 |
3cgv |
X-RAY |
|
2008/03/06 |
NP_393992.1 |
|
N/A |
|
 |
382454 |
|
FP10738A |
|
FP10738A |
|
Geranylgeranyl bacteriochlorophyll reductase-like FixC homolog is a member of COG0644. |
 |
| 13 |
 |
 |
2ou5 |
X-RAY |
|
2007/02/09 |
YP_508196.1 |
|
N/A |
|
 |
370379 |
|
FJ9446A |
|
FJ9446A |
|
|
 |
| 14 |
 |
 |
2fvg |
X-RAY |
|
2006/01/30 |
TM1049 |
|
N/A |
|
 |
282916 |
|
TM1049 |
|
TM1049 |
|
Endoglucanase. |
 |
| 15 |
 |
 |
3dee |
X-RAY |
|
2008/06/09 |
YP_208969.1 |
|
N/A |
|
 |
389948 |
|
FP12834A |
|
FP12834A |
|
Putative regulatory protein functionally associated with DUF692, DUF560, and DUF452. |
 |
| 16 |
 |
 |
2q78 |
X-RAY |
|
2007/06/06 |
TM0581 |
|
N/A |
|
 |
282454 |
|
TM0581 |
|
TM0581 |
|
Hypothetical protein TM0581. |
 |
| 17 |
 |
 |
2q8u |
X-RAY |
|
2007/06/11 |
TM1635 |
|
N/A |
|
 |
372975 |
|
TM1635 |
|
TM1635 |
|
Exonuclease, putative. |
 |
| 18 |
 |
 |
3fcr |
X-RAY |
|
2008/11/22 |
YP_614685.1 |
|
N/A |
|
 |
391382 |
|
MG14585B |
|
MG14585B |
|
Putative PLP-dependent aminotransferase. |
 |
| 19 |
 |
 |
3bdv |
X-RAY |
|
2007/11/15 |
YP_051181.1 |
|
N/A |
|
 |
379345 |
|
FN9870A |
|
FN9870A |
|
YdeN-like protein of unknown function (DUF1234) from superfamily of alpha/beta hydrolases. |
 |
| 20 |
 |
 |
2raf |
X-RAY |
|
2007/09/14 |
NP_786167.1 |
|
N/A |
|
 |
376078 |
|
FL10768A |
|
FL10768A |
|
gi|28379275|ref|NP_786167.1| oxidoreductase [Lactobacillus plantarum WCFS1] |
 |
| 21 |
 |
 |
3dao |
X-RAY |
|
2008/05/29 |
RER070207001050 |
|
N/A |
|
 |
388491 |
|
GD4050C |
|
GD4050C |
|
REr070207001050 |
 |
| 22 |
 |
 |
2q7x |
X-RAY |
|
2007/06/07 |
NP_346012.1 |
|
N/A |
|
 |
366227 |
|
PD01933D |
|
PD01933D |
|
|
 |
| 23 |
 |
 |
3b7c |
X-RAY |
|
2007/10/30 |
NP_715767.1 |
|
N/A |
|
 |
378232 |
|
FM11876A |
|
FM11876A |
|
NTF-2 like protein of unknown function |
 |
| 24 |
 |
 |
2i6g |
X-RAY |
|
2006/08/28 |
16420133 |
|
N/A |
|
 |
359588 |
|
16420133 |
|
CL4127A |
|
|
 |
| 25 |
 |
 |
3b81 |
X-RAY |
|
2007/10/31 |
NP_350189.1 |
|
N/A |
|
 |
379155 |
|
FN10807A |
|
FN10807A |
|
predicted DNA-binding transcriptional regulator of TetR/AcrR family |
 |
| 26 |
 |
 |
2rcd |
X-RAY |
|
2007/09/19 |
YP_051588.1 |
|
N/A |
|
 |
372199 |
|
PG8359C |
|
PG8359C |
|
uncharacterized protein conserved in bacteria with a cystatin-like fold
gi|50122421|ref|YP_051588.1| hypothetical protein ECA3500 [Erwinia carotovora subsp. atroseptica SCRI1043] |
 |
| 27 |
 |
 |
3cwr |
X-RAY |
|
2008/04/22 |
YP_425770.1 |
|
N/A |
|
 |
379808 |
|
FN9673I |
|
FN9673I |
|
Transcriptional regulator of TetR family (YP_425770) and proteins with putative antimicrobial activity are encoded by neighboring genes. |
 |
| 28 |
 |
 |
2h0v |
X-RAY |
|
2006/05/15 |
2636545 |
|
N/A |
|
 |
367501 |
|
2636545 |
|
CL6293A |
|
|
 |
| 29 |
 |
 |
3ceb |
X-RAY |
|
2008/02/28 |
YP_718332.1 |
|
N/A |
|
 |
377935 |
|
FM11633A |
|
FM11633A |
|
This protein shares sequence similarity with the Aminotran_4 (PF01063) family from Pfam (FFAS score: -46.500). It is structurally similar to the D-aminoacid aminotransferase-like PLP-dependent enzymes family from SCOP. |
 |
| 30 |
 |
 |
2ook |
X-RAY |
|
2007/01/25 |
YP_749275.1 |
|
N/A |
|
 |
372476 |
|
PG9822D |
|
PG9822D |
|
|
 |
| 31 |
 |
 |
2pyx |
X-RAY |
|
2007/05/16 |
YP_750003.1 |
|
N/A |
|
 |
374311 |
|
PJ04820A |
|
PJ04820A |
|
sfri_16aug04_Contig89_revised_gene3467 |
 |
| 32 |
 |
 |
3bn7 |
X-RAY |
|
2007/12/13 |
NP_421070.1 |
|
N/A |
|
 |
378287 |
|
FM11923A |
|
FM11923A |
|
Dimeric ferredoxin-like protein. |
 |
| 33 |
 |
 |
2ozh |
X-RAY |
|
2007/02/26 |
NP_638301.1 |
|
N/A |
|
 |
371737 |
|
FK8795C |
|
FK8795C |
|
|
 |
| 34 |
 |
 |
3bdd |
X-RAY |
|
2007/11/14 |
SSUI_28JUL04_CONTIG175_REVISED_GENE346 |
|
N/A |
|
 |
378153 |
|
FM11809A |
|
FM11809A |
|
|
 |
| 35 |
 |
 |
2qne |
X-RAY |
|
2007/07/18 |
DHAF_12NOV03_CONTIG1082_REVISED_GENE2974 |
|
N/A |
|
 |
360990 |
|
PC06253A |
|
PC06253A |
|
|
 |
| 36 |
 |
 |
2h9f |
X-RAY |
|
2006/06/09 |
NP_249484.1 |
|
N/A |
|
 |
366300 |
|
PD04303G |
|
PD04303G |
|
gi|15595990|ref|NP_249484.1| hypothetical protein [Pseudomonas aeruginosa PA01] |
 |
| 37 |
 |
 |
1vjl |
X-RAY |
|
2004/03/10 |
TM0160 |
|
N/A |
|
N/A |
282040 |
|
TM0160 |
|
TM0160 |
|
Predicted protein related to wound inducive proteins in plants |
 |
| 38 |
 |
 |
1j5s |
X-RAY |
|
2002/07/02 |
TM0064 |
|
N/A |
|
N/A |
281945 |
|
TM0064 |
|
TM0064 |
|
Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase) (Uronic
isomerase). |
 |
| 39 |
 |
 |
2amu |
X-RAY |
|
2005/08/10 |
TM0658 |
|
N/A |
|
 |
282530 |
|
TM0658 |
|
TM0658 |
|
Putative superoxide reductase (EC 1.15.1.2) (SOR). |
 |
| 40 |
 |
 |
2nvm |
X-RAY |
|
2006/11/13 |
YP_321976.1 |
|
N/A |
|
 |
367675 |
|
PE00057A |
|
PE00057A |
|
|
 |
| 41 |
 |
 |
2jzd |
NMR |
|
2008/01/04 |
29837497 |
|
N/A |
|
N/A |
391773 |
|
29837497 |
|
SARS025 |
|
gi|29837497|ref|NP_828862.1| putative coronavirus nsp1 [SARS coronavirus] |
 |
| 42 |
 |
 |
2gfh |
X-RAY |
|
2006/03/21 |
17391249 |
|
N/A |
|
 |
354784 |
|
17391249 |
|
17391249 |
|
Protein C20orf147 homolog. |
 |
| 43 |
 |
 |
3bb9 |
X-RAY |
|
2007/11/09 |
YP_750657.1 |
|
N/A |
|
 |
378123 |
|
FM11786A |
|
FM11786A |
|
Genomic neighborhood of the putative ketosteroid isomerase (YP_750657.1) is enriched in genes encoding proteins involved in copper resistance. |
 |
| 44 |
 |
 |
2iab |
X-RAY |
|
2006/09/07 |
NP_828636.1 |
|
N/A |
|
 |
367003 |
|
FG7419A |
|
FG7419A |
|
|
 |
| 45 |
 |
 |
3f14 |
X-RAY |
|
2008/10/27 |
YP_680363.1 |
|
N/A |
|
 |
390726 |
|
MG14500A |
|
MG14500A |
|
NTF2-like protein of unknown function. |
 |
| 46 |
 |
 |
2ftr |
X-RAY |
|
2006/01/24 |
10172812 |
|
N/A |
|
 |
359048 |
|
10172812 |
|
CL5868A |
|
|
 |
| 47 |
 |
 |
3c8l |
X-RAY |
|
2008/02/12 |
NPUN_22DEC03_CONTIG1_REVISED_GENENPR1471 |
|
N/A |
|
 |
381788 |
|
PU8365B |
|
PU8365B |
|
FtsZ-like protein of unknown function. |
 |
| 48 |
 |
 |
2rcc |
X-RAY |
|
2007/09/19 |
NP_241368.1 |
|
N/A |
|
 |
377460 |
|
FM12098A |
|
FM12098A |
|
gi|15613065|ref|NP_241368.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus halodurans] |
 |
| 49 |
 |
 |
3dzz |
X-RAY |
|
2008/07/30 |
YP_813084.1 |
|
N/A |
|
 |
377395 |
|
FM12053A |
|
FM12053A |
|
Putative pyridoxal 5'-phosphate-dependent C-S lyase. |
 |
| 50 |
 |
 |
2b8n |
X-RAY |
|
2005/10/07 |
TM1585 |
|
N/A |
|
 |
283442 |
|
TM1585 |
|
TM1585 |
|
Glycerate kinase (EC 2.7.1.31) |
 |
| 51 |
 |
 |
2ga1 |
X-RAY |
|
2006/03/07 |
YP_321193.1 |
|
N/A |
|
 |
360696 |
|
PC04255A |
|
PC04255A |
|
|
 |
| 52 |
 |
 |
3ejk |
X-RAY |
|
2008/09/18 |
DDES_06JUN05_CONTIG143_REVISED_GENEDDE3696 |
|
N/A |
|
 |
390748 |
|
MG8818A |
|
MG8818A |
|
ddes_06jun05_Contig143_revised_geneDde3696 |
 |
| 53 |
 |
 |
2qs7 |
X-RAY |
|
2007/07/30 |
NP_342590.1 |
|
N/A |
|
 |
372180 |
|
PG9933A |
|
PG9933A |
|
|
 |
| 54 |
 |
 |
2r7h |
X-RAY |
|
2007/09/07 |
YP_389533.1 |
|
N/A |
|
 |
376338 |
|
FL11216A |
|
FL11216A |
|
gi|78358084|ref|YP_389533.1| hypothetical protein Dde_3044 [Desulfovibrio desulfuricans G20] |
 |
| 55 |
 |
 |
2f46 |
X-RAY |
|
2005/11/22 |
7380613 |
|
N/A |
|
 |
367330 |
|
7380613 |
|
CL6101A |
|
|
 |
| 56 |
 |
 |
3ct8 |
X-RAY |
|
2008/04/11 |
NP_243026.1 |
|
N/A |
|
 |
367517 |
|
NB7805A |
|
NB7805A |
|
|
 |
| 57 |
 |
 |
3bl4 |
X-RAY |
|
2007/12/10 |
YP_829618.1 |
|
N/A |
|
 |
378222 |
|
FM11866A |
|
FM11866A |
|
Uncharacterized protein (YP_829618.1) forms intertwined, apparently domain-swapped dimers. |
 |
| 58 |
 |
 |
3bbj |
X-RAY |
|
2007/11/09 |
YP_290423.1 |
|
N/A |
|
 |
371241 |
|
FK9593A |
|
FK9593A |
|
The putative thioesterase II is homologous to thioesterase II from E. coli (1c8u). |
 |
| 59 |
 |
 |
3byq |
X-RAY |
|
2008/01/16 |
NP_889209.1 |
|
N/A |
|
 |
381697 |
|
PU6314B |
|
PU6314B |
|
Protein of unknown function (DUF1185). The protein structure of another member of the same family was deposited with PDB code 2qtp. According to the annotation of similar protein (YP_333612.1), it can be a peptide synthase. |
 |
| 60 |
 |
 |
2oso |
X-RAY |
|
2007/02/06 |
1592102 |
|
N/A |
|
 |
373077 |
|
PC02830C |
|
PC02830C |
|
|
 |
| 61 |
 |
 |
3eo8 |
X-RAY |
|
2008/09/26 |
YP_001089088.1 |
|
N/A |
|
 |
391659 |
|
MG0383AE |
|
MG0383AE |
|
BluB-like flavoprotein. BluB triggers an unusual fragmentation of the FMN cofactor. |
 |
| 62 |
 |
 |
3etn |
X-RAY |
|
2008/10/08 |
YP_209877.1 |
|
N/A |
|
 |
391616 |
|
MG0829AS |
|
MG0829AS |
|
Putative phosphosugar isomerase. Similar to Leptospira interrogans polysialic acid capsule expression protein KpsF |
 |
| 63 |
 |
 |
3bww |
X-RAY |
|
2008/01/10 |
HSOM_08NOV04_CONTIG98_REVISED_GENE911 |
|
N/A |
|
 |
374865 |
|
PJ05114C |
|
PJ05114C |
|
Protein of unknown function (DUF692/COG3220) has some similarity to endonuclease IV. |
 |
| 64 |
 |
 |
2re7 |
X-RAY |
|
2007/09/25 |
YP_263493.1 |
|
N/A |
|
 |
380202 |
|
FH7490A |
|
FH7490A |
|
FH7490A |
 |
| 65 |
 |
 |
1o0x |
X-RAY |
|
2002/09/13 |
TM1478 |
|
N/A |
|
N/A |
283335 |
|
TM1478 |
|
TM1478 |
|
Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase M). |
 |
| 66 |
 |
 |
1o1y |
X-RAY |
|
2003/02/12 |
TM1158 |
|
N/A |
|
 |
283024 |
|
TM1158 |
|
TM1158 |
|
Glutamine amidotransferase |
 |
| 67 |
 |
 |