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Target ID: 417104
Target Name:SP17169A  Protein Accession:ZP_02067074.1  Local Accession: SP17169A  cDNA Accession:REF|NZ_DS264582.1|:406722-407834  PSCA PDB:3up6

Hover over nodes to see experimental data. Click on nodes to go to that point in the data below.

Proposed Target  
 
Active Target  
 
PCR Testing  
 
Amplifer Generation  
 
Orientation  
 
Plasmid Purification  
 
Micro Expression  
 
Expression  
 
Protein Purification  
 
Crystallization  
 
Crystal Hit  
 
SDC Receiving  
 
Screening  
 
Data Collection  
 
Integration  
 
Scaling  
 
Truncating  
 
Phasing  
 
Density Modification  
 
Tracing  
 
Refining  
 
QC  
 
Validation  
 
PDB Deposition  
 
Proposed Target
 
Active Target
 
PCR Testing
 
Amplifer Generation
 
Orientation
 
Plasmid Purification
 
Micro Expression
 
Expression
 
Protein Purification
 
Crystallization
 
Crystal Hit
 
SDC Receiving
 
Screening
 
Data Collection
 
Integration
 
Scaling
 
Truncating
 
Phasing
 
Density Modification
 
Tracing
 
Refining
 
QC
 
Validation
 
PDB Deposition
 
 
Status View
 
Chrono View
 
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1
Name: Putative cell adhesion protein, PF06321, Major fimbrial subunit protein, a periodontopathogen, play an important role in its adhesion to and invasion of host cells.  Start Position: 25  End Position: 370
GNF Target Alias: HK100:SpeedET-SP17169A-bot-370-25-370  Sequence Type: SEGMENT  Residues: 346
DNA Length: 1038  Molecular Weight: 37460.80  Isoelectric Point: 4.48
Epsilon 280: 29910  Gravy Index: -0.13  Species: Bacteroides ovatus
Activated: 1  Alanine Absolute: 24  Alanine Relative: 0.0694
Arginine Absolute: 14  Arginine Relative: 0.0405  Asparagine Absolute: 18
Asparagine Relative: 0.0520  Aspartic Acid Absolute: 27  Aspartic Acid Relative: 0.0780
Cysteine Absolute: 1  Cysteine Relative: 0.0029  Glutamic Acid Absolute: 20
Glutamic Acid Relative: 0.0578  Glutamine Absolute: 13  Glutamine Relative: 0.0376
Glycine Absolute: 25  Glycine Relative: 0.0723  Histidine Absolute: 5
Histidine Relative: 0.0145  Isoleucine Absolute: 28  Isoleucine Relative: 0.0809
Leucine Absolute: 26  Leucine Relative: 0.0751  Lysine Absolute: 11
Lysine Relative: 0.0318  Methionine Absolute: 8  Methionine Relative: 0.0231
Phenylalanine Absolute: 8  Phenylalanine Relative: 0.0231  Proline Absolute: 10
Proline Relative: 0.0289  Serine Absolute: 33  Serine Relative: 0.0954
Threonine Absolute: 32  Threonine Relative: 0.0925  Tryptophan Absolute: 3
Tryptophan Relative: 0.0087  Tyrosine Absolute: 9  Tyrosine Relative: 0.0260
Valine Absolute: 31  Valine Relative: 0.0896  Project: GNF Autogenerated
Selection Date: 2009-11-12  PFAM: submit  
ProposalRelationshipOwnerLab Name
121Collaborator CNT# 164NakayamaDr. Koji Nakayama
87JCSGGNFGenomics Institute of the Novartis Research Foundation

STAGE: Proposed Target

STAGE: Active Target

STAGE: PCR Testing

STAGE: Amplifer Generation

STAGE: Orientation

STAGE: Plasmid Purification

STAGE: Micro Expression

STAGE: Expression

STAGE: Protein Purification

STAGE: Crystallization

STAGE: Crystal Hit

STAGE: SDC Receiving

STAGE: Screening

STAGE: Data Collection

STAGE: Integration

STAGE: Scaling

STAGE: Truncating

STAGE: Phasing

STAGE: Density Modification

STAGE: Tracing

STAGE: Refining

STAGE: QC