JCSG Novel Features Structure Gallery

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JCSG Novel Features Structure Gallery

In case of co-crystallized proteins each member of the complex is listed separately

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	Description	PDB ID	Method	Deposition Date	$Diffraction Image Download$			Target ID	Target Name	Local Accession	Accession Number
1	Putative lipid binding protein from Lipocalins fold	3h3i	X-RAY (MAD)	2009/04/16	N/A		N/A	393040	GS13837A	GS13837A	NP_811174.1
2	Multidomain protein with S1 RNA-binding domains and predicted functional associations with DUF956, DUF1273, DUF948, DUF1250, UPF0223, and several other proteins.	3go5	X-RAY (SAD)	2009/03/18	N/A			389882	PK10409D	PK10409D	NP_345429.1
3	Secreted protein of unknown function (DUF1311).	3gi7	X-RAY (MAD)	2009/03/05	N/A		N/A	365921	PC07007E	PC07007E	NP_742474.1
4	Bacterial lipoprotein of unknown function.	3gf6	X-RAY (SAD)	2009/02/26	N/A		N/A	392967	GS13247A	GS13247A	NP_810146.1
5	Putative polysaccharide binding proteins (DUF1812).	3gf8	X-RAY (MAD)	2009/02/26	N/A		N/A	393038	GS13834A	GS13834A	NP_809975.1
6	NifX-associated protein from the DUF269.	3g7p	X-RAY (MAD)	2009/02/10	N/A			381741	PU6311C	PU6311C	AFE_1570
7	Outer membrane protein, part of carbohydrate binding complex.	3g6i	X-RAY (MAD)	2009/02/06	N/A		N/A	393061	GS14013A	GS14013A	NP_809935.1
8	Putative membrane-associated protein of unknown function.	3g3l	X-RAY (SAD)	2009/02/02	N/A		N/A	393243	GS13738B	GS13738B	YP_211325.1
9	Putative exported protein with YmcC-like fold.	3fzx	X-RAY (MAD)	2009/01/26	N/A		N/A	393247	GS13775A	GS13775A	YP_211880.1
10	NtrC-like two-domain protein.	3fkq	X-RAY (MAD)	2008/12/17	N/A		N/A	389300	PK14342A	PK14342A	RER070207001320
11	Novel protein of unknown function. It is similar to AAO38360 (GenBank) annotated as being induced under nitrogen fixation.	3fjv	X-RAY (MAD)	2008/12/15	N/A			381695	PU10172A	PU10172A	YP_111841.1
12	Putative nucleic acid-binding lipoprotein.	3f1z	X-RAY (SAD)	2008/10/28	N/A			390051	GS13722A	GS13722A	YP_001337197.1
13	Novel Thermotoga maritima protein from the DUF861 family and cupin fold.	2k9z	NMR	2008/10/28	N/A	N/A		282978	TM1112	TM1112	TM1112
14	Fic (Filamentation Induced by cAMP) family protein SO4266.	3eqx	X-RAY (MAD)	2008/10/01	N/A			376495	PJ02661S	PJ02661S	NP_719793.1
15	Phenylacetate-CoA oxygenase subunit PaaB	3egr	X-RAY (MAD)	2008/09/11	N/A			389767	PK6406E	PK6406E	YP_297411.1
16	Putative membrane protein of unknown function (NCBI:PRK10316). May be functionally associated with regulation of fimbrial expression and/or response to leucine.	3dza	X-RAY (MAD)	2008/07/29	N/A			390304	GS14063A	GS14063A	YP_001337144.1
17	Protein of unknown function (DUF427)	3djm	X-RAY (MAD)	2008/06/23	N/A			376596	PS04248	PS04248	YP_001042567.1
18	Putative regulatory protein involved in transcription from DUF2063; functionally associated with DUF692, DUF560, and DUF452.	3dee	X-RAY (MAD)	2008/06/09	N/A			389948	FP12834A	FP12834A	YP_208969.1
19	Putative RnfG subunit of electron transport complex.	3dcz	X-RAY (MAD)	2008/06/04	N/A		N/A	358404	TM0246	TM0246	TM0246
20	Putative aminoglycoside phosphotransferase (protein kinase-like fold)	3csv	X-RAY (SAD)	2008/04/10	N/A			387075	EK8604E	EK8604E	YP_614837.1
21	acetoacetate decarboxylase	3cmb	X-RAY (MAD)	2008/03/21	N/A			378367	PT06314A	PT06314A	YP_001047042.1
22	SsgA-like sporulation-specific cell division [alpha+beta class]	3cm1	X-RAY (MAD)	2008/03/20	N/A		N/A	361176	PC04686E	PC04686E	YP_290167.1
23	Putative Transcriptional Regulator containing a LuxR DNA binding domain	3clo	X-RAY (MAD)	2008/03/19	N/A			383272	FP13075B	FP13075B	NP_811094.1
24	putative beta-lactamase	3cjm	X-RAY (MAD)	2008/03/13	N/A			389964	GS13767A	GS13767A	NP_815223.1
25	Myo-inositol-1-phosphate synthase-related protein	3cin	X-RAY (MR)	2008/03/11				283279	TM1419	TM1419	TM1419
26	Protein of unknown function [TIM beta/alpha-barrel] which belongs to DUF849 family.	3chv	X-RAY (MAD)	2008/03/10	N/A			374753	PJ05853H	PJ05853H	YP_164873.1
27	SusD homolog. SusD is a secreted starch-binding protein with an N-terminal lipid tail that allows it to associate with the outer membrane.	3cgh	X-RAY (MAD)	2008/03/05	N/A			389990	GS7807P	GS7807P	NP_812895.1
28	putative acetyltransferase	3c8v	X-RAY (MAD)	2008/02/13	N/A			377310	FM11964A	FM11964A	YP_390128.1
29	FtsZ-like protein of unknown function.	3c8l	X-RAY (MAD)	2008/02/12	N/A			381788	PU8365B	PU8365B	NPUN_22DEC03_CONTIG1_REVISED_GENENPR1471
30	Putative 3-keto-5-aminohexanoate cleavage enzyme from DUF849	3c6c	X-RAY (SAD)	2008/02/04	N/A			381418	PU6423S	PU6423S	YP_293392.1
31	Nucleotidyltransferase-like protein with C-terminal DNA-binding domain (putative).	3c18	X-RAY (MAD)	2008/01/22	N/A		N/A	377609	FM12207A	FM12207A	YP_001813159.1
32	Protein of unknown function (DUF1185). The protein structure of another member of the same family was deposited with PDB code 2qtp. According to the annotation of similar protein (YP_333612.1), it can be a peptide synthase.	3byq	X-RAY (SAD)	2008/01/16	N/A			381697	PU6314B	PU6314B	NP_889209.1
33	Protein structurally similar to Sm/LSm-like RNA-binding proteins	3by7	X-RAY (MAD)	2008/01/15	N/A		N/A	380229	GN7729A	GN7729A	JCVI_PEP_1096686650277
34	Protein of unknown function (DUF692/COG3220) has some similarity to endonuclease IV.	3bww	X-RAY (MAD)	2008/01/10	N/A			374865	PJ05114C	PJ05114C	HSOM_08NOV04_CONTIG98_REVISED_GENE911
35	Phage-related protein related to the family of phage major capsid protein (PF03864).	3bjq	X-RAY (MAD)	2007/12/04	N/A			373379	PH10216A	PH10216A	NP_890161.1
36	DJ-1/PfpI-like protein but misses catalytic triad.	3bhn	X-RAY (MAD)	2007/11/28	N/A		N/A	377869	FM11578A	FM11578A	YP_001094981.1
37	Predicted acetamidase/formamidase	3b9t	X-RAY (SAD)	2007/11/06	N/A			374794	PJ03069C	PJ03069C	YP_546212.1
38	Protein of unknown function (DUF1696) with pleckstrin-homology domain.	3b77	X-RAY (MAD)	2007/10/30			N/A	380276	PC08000A	PC08000A	YP_001814629.1
39	Putative sulfatase (alkaline phosphatase-like fold)	3b5q	X-RAY (SAD)	2007/10/26	N/A		N/A	377304	FM11925B	FM11925B	NP_810509.1
40	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (single-stranded left-handed beta-helix fold)	2rij	X-RAY (MAD)	2007/10/11	N/A			377381	FM12041A	FM12041A	NP_282733.1
41	putative NTP pyrophosphohydrolase	2rfp	X-RAY (MAD)	2007/10/01	N/A			378014	FM11701A	FM11701A	YP_001813558.1
42	Protein with unknown function which belongs to Pfam DUF1285 family	2re3	X-RAY (MAD)	2007/09/25	N/A			374660	PJ06938A	PJ06938A	YP_165412.1
43	Putative lipid binding protein (all-alpha class)	2rdc	X-RAY (MAD)	2007/09/21	N/A		N/A	372393	PG9895A	PG9895A	NP_951123.1
44	Putative aminoacyl-histidine dipeptidase, member of the Zn-metallopeptidase family	2qyv	X-RAY (MAD)	2007/08/15			N/A	375116	HP9625C	HP9625C	YP_718209.1
45	Bacterial protein from DUF1185 with a chorismate mutase-like fold and sequence homology to a peptide synthase	2qtp	X-RAY (MAD)	2007/08/02	N/A		N/A	374584	PJ06684A	PJ06684A	YP_166079.1
46	Putative sulfur oxidation protein belongs to DsrE/DsrF-like family [DsrEF-like].	2qs7	X-RAY (MAD)	2007/07/30	N/A			372180	PG9933A	PG9933A	NP_342590.1
47	putative metal-dependent hydrolase	2qpx	X-RAY (MAD)	2007/07/25	N/A			375624	FL10757A	FL10757A	LCAS_20SEP02_SCAFFOLD4_REVISED_GENE2707
48	putative methyltransferase	2qne	X-RAY (MAD)	2007/07/18	N/A			360990	PC06253A	PC06253A	DHAF_12NOV03_CONTIG1082_REVISED_GENE2974
49	Mouse N-myc downstream regulated 2 protein, a putative esterase/lipase.	2qmq	X-RAY (MR)	2007/07/16	N/A		N/A	358981	15277975	MM2092B	15277975
50	ethanolamine ammonia-lyase heavy chain	2qez	X-RAY (MAD)	2007/06/26	N/A			366145	PD06751F	PD06751F	YP_013784.1
51	Putative dioxygenase (jelly roll fold)	2qdr	X-RAY (MAD)	2007/06/21	N/A			368884	CM7979A	CM7979A	NPUN_22DEC03_CONTIG1_REVISED_GENENPF5605
52	Protein of unknown function from DUF416	2q9r	X-RAY (MAD)	2007/06/13	N/A			374572	PJ04222C	PJ04222C	YP_001051499.1
53	Putative oxidoreductase	2q9k	X-RAY (MAD)	2007/06/12	N/A			375036	FB8805A	FB8805A	YP_001814466.1
54	Putative exonuclease	2q8u	X-RAY (MAD)	2007/06/11	N/A		N/A	372975	TM1635	TM1635	TM1635
55	ytaA	2q83	X-RAY (MAD)	2007/06/08	N/A		N/A	362376	2635576	CL5902A	2635576
56	DUF3478 protein with a SpoIIaa-like fold. Possibly involved in signalling.	2q3l	X-RAY (MAD)	2007/05/30	N/A		N/A	372337	PG9822C	PG9822C	YP_001095227.1
57	Bacterial protein from DUF1824 with a new fold	2q22	X-RAY (MAD)	2007/05/25	N/A			367679	PE00044A	PE00044A	YP_323524.1
58	putative gamma-carboxymuconolactone decarboxylase subunit	2q0t	X-RAY (MAD)	2007/05/22	N/A			370057	FJ9503A	FJ9503A	YP_554324.1
59	Bacterial protein from DUF3224 with an AOC barrel-like fold	2q03	X-RAY (MAD)	2007/05/18	N/A		N/A	372600	PG9969A	PG9969A	YP_563039.1
60	acetoin utilization protein	2q04	X-RAY (MAD)	2007/05/18	N/A			370251	FJ9248A	FJ9248A	YP_001814707.1
61	Ethanolamine utilization protein eutQ	2pyt	X-RAY (MAD)	2007/05/16	N/A		N/A	374979	PC06249B	PC06249B	16421009
62	Uncharacterized protein from DUF2853	2pyq	X-RAY (MAD)	2007/05/16				373487	PH10062D	PH10062D	YP_512017.1
63	Methyltransferase FkbM	2py6	X-RAY (MAD)	2007/05/15	N/A			368630	CM8004D	CM8004D	YP_546752.1
64	Sama_2622 adopting a new all alpha fold; putative ferritin-like protein	2pv4	X-RAY (MAD)	2007/05/09	N/A		N/A	373751	PH10070D	PH10070D	YP_928494.1
65	B. subtilis YobK enzyme, possibly involved in glycan synthesis	2prv	X-RAY (MAD)	2007/05/04	N/A			367783	PE00012A	PE00012A	NP_389780.1
66	VR4 family, predicted small molecule binding protein MJ_1460	2osd	X-RAY (MAD)	2007/02/05	N/A		N/A	373077	PC02830C	PC02830C	1592102
67	Protein with unknown function which belongs to Pfam DUF3224 family [SO1590-like].	2ooj	X-RAY (SAD)	2007/01/25	N/A			372361	PG9878A	PG9878A	NP_717203.1
68	Protein with unknown function which belongs to Pfam DUF3598 family [All1756-like].	2o62	X-RAY (SAD)	2006/12/06	N/A			369000	CM8073A	CM8073A	NPUN_22DEC03_CONTIG1_REVISED_GENENPR4044
69	putative dioxygenase	2nyh	X-RAY (MAD)	2006/11/20	N/A			367834	PE00092A	PE00092A	YP_555069.1
70	Protein of unknown function from DUF1818 family with a ssDNA-binding transcriptional regulator domain fold	2it9	X-RAY (MAD)	2006/10/19	N/A		N/A	368256	PE00037D	PE00037D	PROC_21JUN05_CONTIG39_REVISED_GENEPMN12A0962
71	an XisH family protein	2inb	X-RAY (MAD)	2006/10/06	N/A			368168	PE00035C	PE00035C	NPUN_22DEC03_CONTIG1_REVISED_GENENPF2941
72	The first structure from a Pfam family SMI/KNR4 (PF09346) involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation	2icg	X-RAY (MAD)	2006/09/12	N/A			368054	PE00012N	PE00012N	NP_472245.1
73	Bacterial protein from DUF1831 with a new fold and a putative role in protein synthesis	2iay	X-RAY (MAD)	2006/09/08	N/A		N/A	368074	PE00055D	PE00055D	NP_785678.1
74	putative tail lysozyme	2ia7	X-RAY (MAD)	2006/09/07	N/A			367993	PE00139F	PE00139F	NP_952040.1
75	protein with Sec-C motif	2i9w	X-RAY (MAD)	2006/09/06	N/A			368209	PE00389E	PE00389E	YP_265345.1
76	Protein of unknown function from DUF1801 with fold belonging to the YdhG-like SCOP family	2i8d	X-RAY (MAD)	2006/09/01	N/A			368040	PE00025C	PE00025C	YP_807469.1
77	putative DNA Mismatch Repair Protein	2huh	X-RAY (MAD)	2006/07/26	N/A			359113	NP_811092.1	CL5919A	NP_811092.1
78	Putative transcriptional regulator from the DUF1048 group with a left-handed superhelix fold	2hh6	X-RAY (SAD)	2006/06/27	N/A			361188	PC06304D	PC06304D	10176605
79	Protein of unknown function from DUF1089 family, possibly involved in glycolipid metabolism with a spiral beta roll fold.	2h1t	X-RAY (MAD)	2006/05/16	N/A			361385	PC06475C	PC06475C	NP_250684.1
80	dye-decolorizing peroxidase	2gvk	X-RAY (MAD)	2006/05/02	N/A		N/A	361324	PC04261D	PC04261D	NP_810132.1
81	Putative subunit E of formylmethanofuran dehydrogenase (FwdE/GAPDH domain-like fold)	2gvi	X-RAY (MAD)	2006/05/02	N/A			361192	PC02663D	PC02663D	10640422
82	SARS-CoV non-structural protein nsp3a.	2gri	NMR	2006/04/24	N/A	N/A	N/A	355891	SARS024	SARS024	29837497
83	Putative DNA-binding protein from homeodomain-like superfamily with DNA/RNA-binding 3-helical bundle fold. The first structure from Pfam family DUF433.	2ga1	X-RAY (MAD)	2006/03/07	N/A			360696	PC04255A	PC04255A	YP_321193.1
84	Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tryptophan--tRNA ligase) (TrpRS).	2g36	X-RAY (MR)	2006/02/17	N/A			282365	TM0492	TM0492	TM0492
85	MtnX phosphatase	2fea	X-RAY (MAD)	2005/12/15	N/A		N/A	359084	2633731	CL5896A	2633731
86	Putative eukaryotic-like protein phosphatase (fold of phosphotyrosine protein phosphatases II)	2f46	X-RAY (MAD)	2005/11/22	N/A		N/A	367330	7380613	CL6101A	7380613
87	Protein from DUF369 with an atypical cyclophilin (peptidylprolyl isomerase) fold. Putative peptidylprolyl cis-trans isomerase.	1zx8	X-RAY (MAD)	2005/06/07	N/A			283228	TM1367	TM1367	TM1367
88	Putative nuclease with a ribonuclease H-like motif fold [TM1739-like].	1zup	X-RAY (SAD)	2005/05/31				283594	TM1739	TM1739	TM1739
89	ApbE protein involved in thiamine biosynthesis	1vrm	X-RAY (MAD)	2005/03/10			N/A	358474	TM1553	TM1553	TM1553
90	Putative asparaginyl hydroxylase	1vrb	X-RAY (MAD)	2005/02/18			N/A	354163	2636534	2636534	2636534
91	Probable 2-phosphosulfolactate phosphatase (EC 3.1.3.71).	1vr0	X-RAY (MAD)	2005/01/26				357129	15026306	TB0797A	15026306
92	Putative DNA-acting enzyme (DUF72 family)	1vpq	X-RAY (MAD)	2004/11/16				283488	TM1631	TM1631	TM1631
93	Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5- semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase).	1vlu	X-RAY (MAD)	2004/08/16	N/A		N/A	354122	YOR323C	YOR323C	YOR323C
94	mRNA decapping enzyme.	1vlr	X-RAY (MR)	2004/08/10				354778	16740816	16740816	16740816
95	Putative nicotinate phosphoribosyltransferase (NAPRTase).	1vlp	X-RAY (MR)	2004/08/06			N/A	354135	YOR209C	YOR209C	YOR209C
96	alanine dehydrogenase	1vll	X-RAY (MAD)	2004/08/03			N/A	354281	2648890	2648890	2648890
97	Spore coat polysaccharide biosynthesis protein spsE.	1vli	X-RAY (MAD)	2004/07/27			N/A	355716	2636322	MB3402A	2636322
98	Hydroperoxide resistance protein OsmC	1vla	X-RAY (MR)	2004/07/15	N/A			282788	TM0919	TM0919	TM0919
99	member of the FMN-binding split barrel superfamily with unknown function	1vl7	X-RAY (MR)	2004/07/13			N/A	356118	17134165	17134165	17134165
100	putative methyltransferase	1vl5	X-RAY (MAD)	2004/07/09			N/A	356107	10174951	10174951	10174951
101	Predicted glycosylase	1vkd	X-RAY (MAD)	2004/05/12				283090	TM1225	TM1225	TM1225
102	NADH pyrophosphatase (EC 3.6.1.-).	1vk6	X-RAY (MR)	2004/04/30			N/A	355840	1790429	1790429	1790429
103	Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3) (FGAM synthase II).	1vk3	X-RAY (MAD)	2004/04/23			N/A	283111	TM1246	TM1246	TM1246
104	Ubiquitin carboxyl-terminal hydrolase 6 (EC 3.1.2.15) (Ubiquitin thiolesterase 6) (Ubiquitin-specific processing protease 6) (Deubiquitinating enzyme 6).	1vjv	X-RAY (MAD)	2004/03/29			N/A	355004	YFR010W	YFR010W	YFR010W
105	4-nitrophenylphosphatase (EC 3.1.3.41)	1vjr	X-RAY (MAD)	2004/03/22				283597	TM1742	TM1742	TM1742
106	Putative Zn-dependent hydrolase of the metallo-beta-lactamase superfamily	1vjn	X-RAY (MAD)	2004/03/11	N/A			282087	TM0207	TM0207	TM0207
107	Conserved PaaD-like protein of unknown function; possibly involved with Fe-S cluster metabolism.	1uwd	NMR	2004/02/03	N/A	N/A		282360	TM0487	TM0487	TM0487
108	NADPH dependent oxidoreductase.	1vj1	X-RAY (MAD)	2003/12/03		N/A		354739	18204011	18204011	18204011
109	Putative sulfur transferase	1rhx	NMR	2003/11/14	N/A	N/A		282848	TM0979	TM0979	TM0979
110	Periplasmic divalent cation tolerance protein.	1o5j	X-RAY (MAD)	2003/09/19				282923	TM1056	TM1056	TM1056
111	Allantoicase (EC 3.5.3.4) (Allantoate amidinohydrolase).	1o59	X-RAY (MAD)	2003/08/22	N/A		N/A	355059	YIR029W	YIR029W	YIR029W
112	SAM-dependent O-methyltransferase	1o54	X-RAY (MR)	2003/08/13	N/A	N/A		282618	TM0748	TM0748	TM0748
113	putative PII-like signaling protein glnB	1o51	X-RAY (SAD)	2003/08/01	N/A	N/A		281902	TM0021	TM0021	TM0021
114	CBS domain-containing protein	1o50	X-RAY (MAD)	2003/07/31	N/A	N/A		282804	TM0935	TM0935	TM0935
115	Nucleotide binding domain (HEPN) of the two-protein nucleotidyl transferase complex	1o3u	X-RAY (MAD)	2003/03/28				282486	TM0613	TM0613	TM0613
116	Glycerophosphodiester phosphodiesterase (GDPD) (TM1621).	1o1z	X-RAY (MAD)	2003/02/12	N/A	N/A		283478	TM1621	TM1621	TM1621
117	N-acetylglucosamine-6-phosphate deacetylase.	1o12	X-RAY (MAD)	2002/10/15	N/A	N/A		282684	TM0814	TM0814	TM0814
118	Activation (AdoMet binding) domain of Methionine synthase (EC 2.1.1.13)	1j6r	X-RAY (MAD)	2002/07/10	N/A	N/A		282146	TM0269	TM0269	TM0269
119	Metal-dependent hydrolase of cytosinedemaniase/chlorohydrolase family.	1j6p	X-RAY (MAD)	2002/07/09	N/A	N/A		282805	TM0936	TM0936	TM0936
120	Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	1j5w	X-RAY (MAD)	2002/07/05	N/A			282096	TM0216	TM0216	TM0216
121	Transcriptional regulator, biotin repressor family.	1j5y	X-RAY (MAD)	2002/07/05	N/A			283459	TM1602	TM1602	TM1602
122	Archease, possible chaperone from DUF101 group	1j5u	X-RAY (MAD)	2002/07/03	N/A	N/A		282950	TM1083	TM1083	TM1083
123	Aspartate dehydrogenase [same functional role as] (EC 1.4.3.16)	1j5p	X-RAY (MAD)	2002/06/27	N/A	N/A		283500	TM1643	TM1643	TM1643


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