PSCA Target Info

TM0002;TM0002	Protein Sequence Comparative Analysis (PSCA)

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TM0002 TM0002 JCSG 281883 Crystal Hit 01-AUG-29

Protein Sequence Information

TOPSAN

JCSG Internal annotations

ACCESSION	TM0002
DESCRIPTION	Hypothetical protein TM0002 (TM orfan).
ORGANISM	Thermotoga maritima
COMMENT

DR	UNIPROT; Q9WXL7_THEMA
DR	SPTR; Q9WXL7 (flat text); Q9WXL7 (good view)
DR	GenBank; AAD35096
DR	FFAS; 281883; Fold and function assignment.
DR	TVPC; TM0002; Homologs in PDB, JCSG and SG center.
DR	OVP; TM0002; Ortholog view popup.
DR	TPM; TM0002; Target PDB monitor.
DR	FSS; TM0002; Target function coverage.

PROPERTY

Residues: 41 aa
Molecule Weight: 4821.25 Dalton
Isoelectric Point: 6.52
Extinction Coefficient: 6990
Gravy Index: -.74
Number of Met residues: 1
Percentage of Met residues: 2.44 %
Number of Cys residues: 1
Percentage of Cys residues: 2.44 %

SEQUENCE  amino acids 41 aa
>TM0002  TM0002 hypothetical protein
MSPEDWKRLICFHTSKEVLKQTLDDAQQNISDSVSIPLRKY

CDS  cDNA 123 bp
   1 atgtcccccg aagactggaa aaggcttata tgtttccata cctctaagga agtattgaaa    60
  61 caaactctcg acgatgcaca gcagaacatc tccgacagtg tttccatacc tctaaggaag   120
 121 tat   123

Target constructs
Download sequence in PIR or FASTA format
Chemical properties of sequence with tag

GENE PREDICTION

LEFT END	RIGHT END	FRAME	PREDICTOR	SCORE
483	608	-3	Glimmer3 score	4.7	poor
			Genemark probabilities	- -	-
			GenemarkHMM class	-	-

Notes

The start codon is a ATG/Methionine in most of sequences, but the GTG/V, TTG/L, CTG/I can be the start codons in some cases as expressing in E.coli. The start codon warning is labelled by RED color in sequence(sample: 10174951).

Protein sequence information contains the annotation contents from both of JCSG and SWISS-PROT. The SWISS-PROT/TrEMBL annotation is accessed from SWALL(SPTR) on the EBI SRS server. PDB homologes show both identical and highly similar proteins with released date and protein function.

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