PSCA Target Info

TM0004;TM0004	Protein Sequence Comparative Analysis (PSCA)

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TM0004 TM0004 JCSG 281885 Protein Purification 04-JUL-19

Protein Sequence Information

TOPSAN

JCSG Internal annotations

ACCESSION	TM0004
DESCRIPTION	Hypothetical protein TM0004 (TM orfan).
ORGANISM	Thermotoga maritima
COMMENT

DR	UNIPROT; Q9WXL9_THEMA
DR	SPTR; Q9WXL9 (flat text); Q9WXL9 (good view)
DR	GenBank; AAD35098
DR	FFAS; 281885; Fold and function assignment.
DR	TVPC; TM0004; Homologs in PDB, JCSG and SG center.
DR	OVP; TM0004; Ortholog view popup.
DR	TPM; TM0004; Target PDB monitor.
DR	FSS; TM0004; Target function coverage.

PROPERTY

Residues: 31 aa
Molecule Weight: 3827.28 Dalton
Isoelectric Point: 6.52
Extinction Coefficient: 6990
Gravy Index: -.15
Number of Met residues: 1
Percentage of Met residues: 3.23 %
Number of Cys residues: 0
Percentage of Cys residues: 0.00 %

SEQUENCE  amino acids 31 aa
>TM0004  TM0004 hypothetical protein
MKDLYERFNNSLEVWKLVELFGTSIRIHLFQ

CDS  cDNA 93 bp
   1 atgaaagatt tgtatgaacg tttcaataat tccttagagg tatggaaact tgtcgaactc    60
  61 tttggtactt ccatccggat acatctgttt caa    93

Target constructs
Download sequence in PIR or FASTA format
Chemical properties of sequence with tag

GENE PREDICTION

PREDICTOR	SCORE
Glimmer3 score	-	-
Genemark probabilities	- -	-
GenemarkHMM class	-	-

Notes

The start codon is a ATG/Methionine in most of sequences, but the GTG/V, TTG/L, CTG/I can be the start codons in some cases as expressing in E.coli. The start codon warning is labelled by RED color in sequence(sample: 10174951).

Protein sequence information contains the annotation contents from both of JCSG and SWISS-PROT. The SWISS-PROT/TrEMBL annotation is accessed from SWALL(SPTR) on the EBI SRS server. PDB homologes show both identical and highly similar proteins with released date and protein function.

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